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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00200
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00200
Identity
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 50.0 | 4.08e-01 | 80.7% | 38.5% |
| 2nydA02 | 2.20.28.300 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.69 | 46.0 | 5.06e-01 | 87.7% | 97.6% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 48.0 | 4.03e-01 | 82.5% | 43.4% |
| 3ec8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 55.0 | 4.21e-01 | 96.5% | 40.3% |
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 49.0 | 4.09e-01 | 80.7% | 55.1% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.63 | 50.0 | 3.94e-01 | 91.2% | 77.9% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 49.0 | 3.75e-01 | 87.7% | 56.6% |
| 3bgaA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 49.0 | 4.08e-01 | 89.5% | 61.0% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.61 | 47.0 | 3.94e-01 | 84.2% | 51.5% |
| 4lr4A01 | 2.60.120.1420 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 47.0 | 3.33e-01 | 84.2% | 35.8% |
| 3of1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 43.0 | 3.29e-01 | 80.7% | 32.3% |
| 7sqxA02 | 3.30.70.2150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 46.0 | 3.88e-01 | 82.5% | 84.7% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 45.0 | 3.71e-01 | 78.9% | 45.1% |
| 4bf8A00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 42.0 | 3.40e-01 | 75.4% | 65.8% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.60 | 46.0 | 3.56e-01 | 84.2% | 85.0% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 45.0 | 3.75e-01 | 82.5% | 51.0% |
| 6u7jA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 3.96e-01 | 84.2% | 55.1% |
| 3fn9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 3.74e-01 | 91.2% | 54.2% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 3.92e-01 | 82.5% | 54.3% |
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.59 | 44.0 | 3.47e-01 | 84.2% | 84.8% |
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 3.44e-01 | 86.0% | 38.0% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 44.0 | 3.40e-01 | 84.2% | 46.8% |
| 8dkuA02 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.58 | 46.0 | 3.52e-01 | 91.2% | 41.5% |
| 3fsyB01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.03e-01 | 100.0% | 80.6% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 44.0 | 3.73e-01 | 86.0% | 72.5% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 3.75e-01 | 91.2% | 57.7% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.57 | 42.0 | 3.29e-01 | 82.5% | 47.1% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.57 | 46.0 | 3.54e-01 | 96.5% | 43.9% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 45.0 | 3.73e-01 | 89.5% | 57.8% |
| 3rbgD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 42.0 | 3.57e-01 | 84.2% | 58.3% |
| 2pn5A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.56 | 44.0 | 3.74e-01 | 89.5% | 51.5% |
| 5jtwA02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.56 | 43.0 | 3.72e-01 | 89.5% | 86.0% |
| 4es8B02 | 2.60.40.3580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.61e-01 | 89.5% | 84.2% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 4.03e-01 | 86.0% | 83.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 43.0 | 3.78e-01 | 96.5% | 66.7% |
| 1es7B00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 38.0 | 3.54e-01 | 82.5% | 83.1% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 41.0 | 2.84e-01 | 82.5% | 53.9% |
| 2b39A06 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.53 | 39.0 | 3.21e-01 | 86.0% | 62.9% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 38.0 | 2.99e-01 | 89.5% | 31.2% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 41.0 | 3.22e-01 | 96.5% | 93.2% |
| 4jklA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.52e-01 | 91.2% | 54.7% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 40.0 | 3.31e-01 | 86.0% | 99.0% |
| 3cueC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 40.0 | 3.11e-01 | 93.0% | 92.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839138 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.76 | 54.0 | 3.45e-01 | 82.5% | 16.5% |
| 3952771 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 55.0 | 4.43e-01 | 84.2% | 65.7% |
| 3789849 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 51.0 | 5.09e-01 | 80.7% | 80.0% |
| 4256432 | 11.1.4.72 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd | 0.69 | 49.0 | 4.36e-01 | 80.7% | 52.5% |
| 3847724 | 11.1.1.463 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 | 0.65 | 50.0 | 4.19e-01 | 84.2% | 79.0% |
| 5018123 | 5.1.4.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YNCE | 0.65 | 46.0 | 2.82e-01 | 82.5% | 11.0% |
| 3180640 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.65 | 49.0 | 3.64e-01 | 84.2% | 84.4% |
| 3602023 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.64 | 50.0 | 4.05e-01 | 86.0% | 68.2% |
| 3899241 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.64 | 48.0 | 3.70e-01 | 82.5% | 39.2% |
| 3797738 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.63 | 47.0 | 3.45e-01 | 80.7% | 40.5% |
| 3419007 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 53.0 | 4.25e-01 | 98.2% | 80.0% |
| 5070545 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 47.0 | 3.72e-01 | 84.2% | 67.5% |
| 4959360 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 46.0 | 3.85e-01 | 84.2% | 57.1% |
| 1309233 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.61 | 46.0 | 3.47e-01 | 84.2% | 76.4% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.60 | 52.0 | 4.30e-01 | 98.2% | 75.2% |
| 3256588 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 46.0 | 3.44e-01 | 87.7% | 32.0% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.60 | 52.0 | 4.47e-01 | 98.2% | 87.8% |
| 5081704 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 45.0 | 3.06e-01 | 86.0% | 20.9% |
| 5038686 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 43.0 | 3.48e-01 | 78.9% | 73.9% |
| 5068228 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 43.0 | 3.64e-01 | 86.0% | 43.8% |
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 48.0 | 4.42e-01 | 98.2% | 68.8% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.58 | 49.0 | 4.63e-01 | 96.5% | 78.6% |
| 4980287 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 48.0 | 4.30e-01 | 96.5% | 64.7% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 48.0 | 4.26e-01 | 98.2% | 71.6% |
| 4969101 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 44.0 | 3.66e-01 | 86.0% | 71.4% |
| 3519702 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 43.0 | 3.44e-01 | 86.0% | 89.2% |
| 3919775 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.53e-01 | 86.0% | 56.0% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 42.0 | 3.78e-01 | 94.7% | 73.3% |
| 4012054 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.22e-01 | 91.2% | 58.6% |
| 5053230 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 37.0 | 2.94e-01 | 75.4% | 66.7% |
| 5048561 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 37.0 | 2.95e-01 | 75.4% | 68.3% |
| 5049326 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 2.98e-01 | 78.9% | 64.8% |
| 5048993 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 37.0 | 2.85e-01 | 75.4% | 66.2% |
| 4028560 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.52 | 41.0 | 3.15e-01 | 91.2% | 93.0% |
| 4541933 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.51 | 38.0 | 2.82e-01 | 82.5% | 47.5% |
| 4979842 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.16e-01 | 87.7% | 84.0% |
| 4680230 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.51 | 37.0 | 3.02e-01 | 80.7% | 52.2% |