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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00221
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00221
Identity
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 57-100
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dsgA01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.70 | 55.0 | 4.37e-01 | 100.0% | 40.6% |
| 4g2aA02 | 1.20.58.1690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 50.0 | 3.94e-01 | 75.0% | 36.8% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 47.0 | 3.98e-01 | 77.3% | 51.9% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 47.0 | 3.31e-01 | 88.6% | 33.1% |
| 2yg3A02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.59 | 50.0 | 3.46e-01 | 100.0% | 39.6% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 51.0 | 4.25e-01 | 100.0% | 74.7% |
| 5z7cA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 51.0 | 3.42e-01 | 100.0% | 60.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 50.0 | 4.02e-01 | 100.0% | 69.2% |
| 1ezjA01 | 1.10.287.320 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain | 0.58 | 49.0 | 4.44e-01 | 97.7% | 77.4% |
| 4lwsB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 44.0 | 3.58e-01 | 86.4% | 43.2% |
| 1h1oA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 45.0 | 3.90e-01 | 93.2% | 65.3% |
| 8e9gE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.56 | 41.0 | 3.73e-01 | 84.1% | 57.1% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 46.0 | 3.81e-01 | 100.0% | 57.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4083860 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.76 | 66.0 | 4.70e-01 | 100.0% | 34.1% |
| 5051020 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.68 | 55.0 | 3.41e-01 | 90.9% | 24.2% |
| 3324788 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.68 | 51.0 | 4.90e-01 | 100.0% | 70.9% |
| 4034547 | 311.1.1.1 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 | 0.67 | 53.0 | 3.96e-01 | 100.0% | 100.0% |
| 4971428 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.65 | 52.0 | 3.32e-01 | 97.7% | 17.8% |
| 4029427 | 4085.1.1.0 ↗ | alpha arrays › RbcX-like › RbcX-like › RbcX-like | 0.63 | 54.0 | 4.00e-01 | 100.0% | 66.7% |
| 3208290 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.60 | 49.0 | 3.59e-01 | 97.7% | 35.6% |
| 3599896 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.57 | 49.0 | 3.20e-01 | 95.5% | 23.7% |
| 4201475 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.56 | 45.0 | 2.90e-01 | 88.6% | 22.1% |