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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00242

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00242

Identity

Kingdom:
phage

Quality

93.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13576.13 best Pentapeptide_3 32.1 1.50e-07 98.6% 93.8%
PF00805.29 Pentapeptide 44.4 1.30e-11 55.6% 95.0%
PF00805.29 Pentapeptide 44.7 1.10e-11 45.8% 82.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j8kA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.97 94.0 6.73e-01 100.0% 64.2%
2j8iA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.96 92.0 7.98e-01 100.0% 70.6%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.95 91.0 6.49e-01 100.0% 50.6%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.94 90.0 7.10e-01 100.0% 68.9%
2xt2B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.93 89.0 6.22e-01 100.0% 48.5%
2xtwD00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.90 84.0 5.87e-01 100.0% 58.2%
2qyuA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.86 80.0 6.04e-01 100.0% 85.4%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.84 77.0 6.91e-01 100.0% 92.8%
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 65.0 4.03e-01 100.0% 40.1%
5gkdA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 64.0 4.31e-01 100.0% 68.4%
1ee6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 65.0 4.72e-01 100.0% 82.2%
1jtaA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 63.0 4.04e-01 100.0% 57.9%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 58.0 3.52e-01 100.0% 33.1%
1yy9A03 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.65 56.0 4.33e-01 100.0% 75.6%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 55.0 4.43e-01 100.0% 68.8%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017863 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.98 95.0 5.97e-01 100.0% 45.9%
3967223 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.98 94.0 6.95e-01 100.0% 69.8%
4926840 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.93e-01 100.0% 75.6%
3449922 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 94.0 6.68e-01 100.0% 72.8%
4067124 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.03e-01 100.0% 48.9%
1905833 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 94.0 6.52e-01 100.0% 60.7%
4340140 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 5.84e-01 100.0% 34.7%
3307274 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 93.0 6.96e-01 98.6% 61.3%
4097358 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.91e-01 100.0% 69.4%
4804849 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 82.0 8.56e-01 87.5% 94.0%
1788824 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.23e-01 100.0% 47.6%
4973402 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.97 94.0 6.43e-01 100.0% 63.9%
4978733 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.27e-01 100.0% 50.2%
3539224 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 94.0 6.56e-01 100.0% 64.2%
4683546 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.31e-01 100.0% 59.5%
3974579 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 6.60e-01 100.0% 60.0%
4996490 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 6.75e-01 100.0% 65.3%
4654697 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 94.0 7.12e-01 100.0% 63.2%
3249938 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 93.0 6.36e-01 100.0% 52.9%
1630684 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 6.57e-01 100.0% 50.0%
3259179 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.97 93.0 6.87e-01 100.0% 69.4%
3327690 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 6.86e-01 100.0% 56.9%
1176421 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 7.65e-01 100.0% 83.6%
3414943 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 6.46e-01 100.0% 49.7%
1268669 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.97 93.0 6.16e-01 100.0% 49.2%
3248507 207.9.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_4 0.96 93.0 6.46e-01 100.0% 57.4%
143698 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.96 92.0 7.03e-01 100.0% 78.5%
4542541 207.9.1.8 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 0.96 92.0 6.44e-01 100.0% 47.9%
4308690 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.96 92.0 7.06e-01 100.0% 65.0%
7227 207.9.1.7 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.95 92.0 6.51e-01 100.0% 50.3%
5057836 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.95 91.0 6.50e-01 100.0% 62.2%
4959183 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.95 91.0 6.14e-01 100.0% 50.0%
4008184 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.95 91.0 6.09e-01 100.0% 48.3%
1176419 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.95 86.0 7.53e-01 94.4% 89.8%
3427990 207.9.1.7 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.94 90.0 6.81e-01 100.0% 78.0%
3337588 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.94 90.0 6.81e-01 100.0% 62.0%
454318 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.94 89.0 6.17e-01 100.0% 66.7%
3708646 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.94 89.0 6.01e-01 100.0% 50.0%
5018780 207.9.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 0.93 88.0 6.13e-01 100.0% 66.0%
140987 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.93 88.0 6.17e-01 100.0% 47.7%
4308074 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.93 87.0 6.06e-01 100.0% 64.4%
4294497 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.92 87.0 5.98e-01 100.0% 68.8%
3268714 207.9.1.7 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.92 87.0 5.96e-01 100.0% 52.3%
4004554 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.92 86.0 6.26e-01 100.0% 75.4%
3278252 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.92 86.0 5.98e-01 100.0% 64.4%
2434107 207.9.1.8 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 0.91 86.0 6.06e-01 100.0% 58.9%
3704197 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.91 85.0 5.80e-01 100.0% 73.2%
3613797 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.90 84.0 5.80e-01 100.0% 41.7%
3600332 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.90 84.0 5.89e-01 100.0% 51.5%
3238891 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.88 81.0 5.85e-01 100.0% 68.4%
4527010 207.9.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.88 82.0 5.97e-01 100.0% 61.7%
3983450 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.88 81.0 6.79e-01 100.0% 80.0%
3284600 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.87 79.0 7.29e-01 98.6% 81.1%
4982320 207.9.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 0.87 80.0 5.81e-01 100.0% 65.4%
4968415 207.9.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 0.87 80.0 5.72e-01 100.0% 64.6%
3937180 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.86 79.0 5.86e-01 100.0% 52.6%
3584966 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.86 79.0 6.58e-01 100.0% 92.5%
4968345 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.86 79.0 5.64e-01 100.0% 59.5%
4506663 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.85 80.0 5.83e-01 100.0% 76.6%
4025678 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.85 78.0 6.23e-01 100.0% 68.1%
3972107 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.85 80.0 7.20e-01 100.0% 78.9%
4969960 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.85 76.0 6.92e-01 98.6% 87.4%
None 0.83 76.0 6.76e-01 100.0% 91.0%
4856486 207.9.1.5 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.83 76.0 6.51e-01 100.0% 82.0%
3248661 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.83 74.0 5.23e-01 100.0% 52.6%
4027041 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.82 73.0 5.48e-01 100.0% 63.4%
3286791 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.80 71.0 6.21e-01 100.0% 83.6%
3621708 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.80 70.0 5.28e-01 100.0% 62.9%
4980775 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 67.0 4.23e-01 100.0% 40.0%
3254620 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 65.0 4.10e-01 100.0% 43.5%
4981077 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 65.0 4.46e-01 100.0% 55.0%
3260917 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 64.0 4.00e-01 100.0% 41.7%
5033960 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.74 65.0 4.19e-01 100.0% 42.6%
5069850 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.73 65.0 3.94e-01 100.0% 28.1%
5033010 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.73 64.0 4.07e-01 100.0% 41.6%
4969196 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.72 63.0 4.02e-01 100.0% 39.2%
4969618 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.72 63.0 4.47e-01 100.0% 58.7%
4981294 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.71 63.0 4.77e-01 100.0% 75.4%
4989914 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.71 63.0 3.95e-01 100.0% 37.0%
3680585 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.71 62.0 4.35e-01 100.0% 67.6%
3342957 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.70 62.0 4.20e-01 100.0% 71.1%
3949141 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.70 62.0 3.81e-01 100.0% 46.1%
3264625 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 60.0 4.40e-01 100.0% 55.3%