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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00259
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00259
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-234
Domain cluster:
rep: IMGVR_UViG_3300010239_000028-3300010239-Ga0136451_1000008938__D83-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00478.32 best | IMPDH | 189.2 | 1.50e-55 | 100.0% | 61.2% |
D2
medium
residues 242-286
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zfjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 60.0 | 3.40e-01 | 100.0% | 8.2% |
| 1nf7A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 53.0 | 3.05e-01 | 100.0% | 7.7% |
| 1mehA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 50.0 | 2.97e-01 | 100.0% | 9.9% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.61 | 41.0 | 4.12e-01 | 95.6% | 68.8% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.56 | 35.0 | 3.58e-01 | 100.0% | 62.8% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 47.0 | 3.91e-01 | 100.0% | 95.1% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 46.0 | 3.73e-01 | 100.0% | 82.4% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 42.0 | 3.50e-01 | 97.8% | 70.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4151696 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.78 | 60.0 | 3.59e-01 | 100.0% | 11.6% |
| 4157113 | 2002.1.1.280 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO | 0.78 | 60.0 | 3.57e-01 | 100.0% | 11.7% |
| 4226134 | 2002.1.1.263 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh | 0.77 | 59.0 | 3.53e-01 | 100.0% | 11.6% |
| 3589689 | 2002.1.1.263 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh | 0.76 | 59.0 | 3.52e-01 | 100.0% | 11.7% |
| 3555073 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.76 | 67.0 | 3.94e-01 | 100.0% | 13.1% |
| 4173173 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.75 | 65.0 | 3.86e-01 | 100.0% | 12.9% |
| 4967106 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.73 | 62.0 | 3.68e-01 | 100.0% | 15.3% |
| 3627326 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.70 | 57.0 | 3.43e-01 | 100.0% | 12.1% |
| None | — | 0.70 | 58.0 | 3.50e-01 | 100.0% | 14.4% | |
| 1117705 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.69 | 59.0 | 3.46e-01 | 100.0% | 13.7% |
| None | — | 0.68 | 59.0 | 3.47e-01 | 100.0% | 13.2% | |
| 5049660 | 2002.1.1.23 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH | 0.68 | 59.0 | 3.48e-01 | 100.0% | 13.3% |
| 3247368 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 45.0 | 3.65e-01 | 100.0% | 38.6% |
| 3280328 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.56 | 43.0 | 2.83e-01 | 100.0% | 20.0% |
| 3611446 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 39.0 | 2.46e-01 | 75.6% | 56.1% |
| 4257482 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.55 | 44.0 | 2.94e-01 | 100.0% | 63.3% |
| 3734478 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 2.68e-01 | 100.0% | 28.1% |
| 1833564 | 2484.1.1.42 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_2 | 0.51 | 38.0 | 2.42e-01 | 86.7% | 26.4% |
| 3894646 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 44.0 | 2.70e-01 | 100.0% | 24.6% |