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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00275

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00275

Identity

Kingdom:
phage

Quality

89.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-64
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 63.0 6.12e-01 100.0% 72.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 64.0 6.71e-01 100.0% 94.3%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.76 69.0 5.76e-01 100.0% 83.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.23e-01 100.0% 76.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 56.0 5.66e-01 100.0% 86.4%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.69 50.0 4.44e-01 78.0% 90.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.68 61.0 5.28e-01 100.0% 78.9%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 55.0 5.27e-01 100.0% 77.1%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 48.0 3.37e-01 78.0% 40.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.09e-01 100.0% 71.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.45e-01 100.0% 79.2%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 58.0 4.24e-01 100.0% 52.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 54.0 5.01e-01 100.0% 73.3%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 48.0 3.34e-01 79.7% 43.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.33e-01 100.0% 80.8%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 46.0 3.19e-01 78.0% 41.4%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.63 52.0 4.52e-01 94.9% 89.7%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 51.0 4.88e-01 89.8% 86.8%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.62 43.0 3.61e-01 72.9% 96.0%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 45.0 3.14e-01 78.0% 36.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.33e-01 91.5% 66.2%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.72e-01 74.6% 53.1%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.61 44.0 3.04e-01 78.0% 37.1%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.41e-01 93.2% 95.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.34e-01 100.0% 78.5%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 48.0 3.01e-01 91.5% 43.3%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 42.0 3.06e-01 81.4% 45.4%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 46.0 3.34e-01 100.0% 48.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 45.0 3.68e-01 93.2% 81.0%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.72e-01 89.8% 71.8%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 45.0 3.88e-01 91.5% 64.9%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 42.0 3.08e-01 83.1% 47.3%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.88e-01 100.0% 71.2%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 43.0 3.25e-01 94.9% 84.7%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.17e-01 91.5% 92.3%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.81e-01 94.9% 84.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 43.0 3.42e-01 98.3% 77.9%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.46e-01 94.9% 82.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.41e-01 81.4% 82.6%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.15e-01 94.9% 65.4%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.55e-01 93.2% 88.3%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.23e-01 91.5% 80.5%
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.50 44.0 2.87e-01 94.9% 96.6%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 2.90e-01 93.2% 32.3%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 69.0 7.13e-01 100.0% 87.3%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 64.0 6.39e-01 100.0% 76.7%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.83 65.0 6.55e-01 100.0% 83.1%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 63.0 6.29e-01 100.0% 81.7%
3612090 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.53e-01 100.0% 85.0%
3598499 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 65.0 4.79e-01 100.0% 36.4%
4306285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 63.0 5.95e-01 100.0% 72.9%
4961854 4.1.1.492 beta barrels › SH3 › SH3 › SH3 › PF26460 0.78 72.0 6.57e-01 100.0% 86.7%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.78 67.0 5.99e-01 100.0% 68.8%
3676628 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.77 71.0 5.47e-01 100.0% 48.3%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.77 70.0 6.27e-01 100.0% 72.5%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 63.0 5.29e-01 100.0% 54.7%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.31e-01 100.0% 55.8%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.76 68.0 5.34e-01 100.0% 49.6%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 64.0 6.44e-01 100.0% 90.0%
3370389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.47e-01 100.0% 87.7%
3429075 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.75 52.0 4.81e-01 72.9% 69.3%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.37e-01 100.0% 61.1%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.73 66.0 5.15e-01 100.0% 48.3%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.73 63.0 5.56e-01 100.0% 65.9%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.73 61.0 6.15e-01 100.0% 90.0%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.73 58.0 5.46e-01 100.0% 71.4%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 61.0 5.24e-01 100.0% 57.9%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.73 62.0 5.42e-01 100.0% 62.2%
3232054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 4.86e-01 100.0% 51.0%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.73 58.0 5.33e-01 100.0% 68.0%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.72 64.0 5.27e-01 100.0% 64.4%
5035327 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 50.0 4.45e-01 74.6% 90.6%
3572436 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 63.0 5.12e-01 100.0% 59.1%
3574352 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.71 64.0 5.17e-01 100.0% 74.5%
3484446 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.71 63.0 3.91e-01 100.0% 30.5%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.96e-01 100.0% 86.2%
3793700 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.71 63.0 4.60e-01 100.0% 51.2%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 4.60e-01 100.0% 44.2%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.71 56.0 5.08e-01 100.0% 63.7%
4335022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.30e-01 100.0% 68.4%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.71 62.0 5.31e-01 100.0% 75.8%
3591144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 62.0 4.54e-01 98.3% 38.0%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.70 58.0 5.08e-01 100.0% 61.2%
3869065 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 5.20e-01 100.0% 65.0%
4060846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.28e-01 100.0% 78.9%
3879415 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.69 61.0 3.83e-01 100.0% 30.5%
3838219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 50.0 4.47e-01 79.7% 92.9%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 60.0 5.26e-01 100.0% 66.7%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.75e-01 100.0% 49.6%
3452899 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 61.0 3.88e-01 100.0% 30.9%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 55.0 5.27e-01 100.0% 77.1%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 61.0 5.65e-01 100.0% 88.0%
3251170 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 61.0 5.73e-01 100.0% 84.3%
5044263 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 4.83e-01 83.1% 90.0%
3623084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.49e-01 100.0% 45.6%
5012425 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 57.0 4.38e-01 100.0% 54.3%
4446654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 51.0 4.89e-01 86.4% 94.3%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 54.0 5.01e-01 100.0% 73.3%
4985735 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.65 49.0 4.17e-01 81.4% 85.3%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 57.0 4.66e-01 100.0% 56.4%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 2.76e-01 93.2% 9.2%
3587082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 44.0 4.61e-01 89.8% 79.6%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 58.0 5.10e-01 100.0% 68.2%
3572647 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.64 57.0 4.87e-01 100.0% 63.3%
3650798 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.59e-01 100.0% 65.2%
3633449 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 44.0 3.16e-01 72.9% 57.6%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 54.0 4.62e-01 100.0% 61.0%
3204891 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.04e-01 100.0% 97.3%
4944596 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 53.0 4.22e-01 100.0% 57.6%
3799904 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.61 52.0 3.18e-01 100.0% 16.0%
3952804 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 41.0 4.22e-01 89.8% 76.4%
3687932 708.1.2.3 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.60 48.0 3.92e-01 91.5% 72.5%
4243492 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 44.0 4.47e-01 91.5% 78.3%
5073192 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 44.0 4.30e-01 88.1% 76.9%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.56 46.0 4.39e-01 100.0% 77.3%
4120420 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.56 45.0 3.70e-01 93.2% 75.7%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 46.0 2.77e-01 93.2% 17.2%
5019052 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 42.0 3.60e-01 88.1% 57.4%
4649416 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.54 46.0 4.11e-01 96.6% 71.8%
3520852 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 38.0 2.95e-01 89.8% 30.0%
3600338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.73e-01 96.6% 65.0%
4666156 211.1.1.47 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase, Glyoxalase_5 0.51 40.0 2.56e-01 89.8% 38.5%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.50 39.0 3.34e-01 88.1% 90.4%