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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00280
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00280
Identity
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-127
Domain cluster:
rep: PH2015_20_scaffold_1_prodigal-single.1__X__X__00019__D2-105
D2
high
residues 136-253
Domain cluster:
rep: MN270266.1__QGJ85858.1__X__00053__D136-224
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.81 | 46.0 | 6.03e-01 | 72.9% | 100.0% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 44.0 | 5.50e-01 | 73.7% | 100.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 43.0 | 5.25e-01 | 78.0% | 96.1% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 40.0 | 4.95e-01 | 73.7% | 95.8% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 40.0 | 4.51e-01 | 73.7% | 75.0% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 4.84e-01 | 77.1% | 100.0% |
| 3hl8A02 | 3.30.1520.20 | Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 | 0.61 | 51.0 | 4.90e-01 | 89.8% | 100.0% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 45.0 | 4.26e-01 | 77.1% | 71.6% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.60 | 32.0 | 3.60e-01 | 76.3% | 64.8% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 45.0 | 4.14e-01 | 78.8% | 86.0% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 45.0 | 4.17e-01 | 80.5% | 90.1% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.58 | 43.0 | 4.01e-01 | 76.3% | 84.2% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 41.0 | 3.58e-01 | 73.7% | 50.3% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.57 | 41.0 | 4.09e-01 | 78.0% | 73.1% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 45.0 | 3.59e-01 | 84.7% | 56.4% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 42.0 | 3.92e-01 | 78.0% | 76.6% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 44.0 | 4.12e-01 | 89.8% | 100.0% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 41.0 | 3.60e-01 | 81.4% | 82.9% |
| 3ptaA03 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.52 | 47.0 | 4.13e-01 | 98.3% | 90.7% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 42.0 | 3.66e-01 | 87.3% | 100.0% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 39.0 | 3.50e-01 | 79.7% | 82.5% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.91 | 66.0 | 7.56e-01 | 89.0% | 96.7% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.83 | 63.0 | 6.82e-01 | 89.8% | 92.0% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.81 | 45.0 | 5.93e-01 | 70.3% | 100.0% |
| 4152374 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 52.0 | 6.09e-01 | 73.7% | 96.4% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 49.0 | 5.87e-01 | 71.2% | 96.2% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.75 | 62.0 | 6.41e-01 | 95.8% | 91.8% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 49.0 | 5.78e-01 | 73.7% | 94.1% |
| 2502914 | 4.31.1.0 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 | 0.72 | 63.0 | 6.07e-01 | 92.4% | 92.3% |
| 4109046 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 47.0 | 5.52e-01 | 72.9% | 97.6% |
| 5024617 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.68 | 48.0 | 5.25e-01 | 78.0% | 89.5% |
| 3970000 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 44.0 | 4.78e-01 | 72.9% | 78.0% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.67 | 44.0 | 5.13e-01 | 78.8% | 94.1% |
| 2410381 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.66 | 42.0 | 4.98e-01 | 72.9% | 94.9% |
| 3907176 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.66 | 45.0 | 5.12e-01 | 74.6% | 93.3% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 39.0 | 4.80e-01 | 76.3% | 98.6% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 40.0 | 3.81e-01 | 73.7% | 51.4% |
| 3238915 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.63 | 49.0 | 3.55e-01 | 80.5% | 35.9% |
| 3530891 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 47.0 | 4.94e-01 | 80.5% | 88.1% |
| 4952973 | 4.15.1.0 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like | 0.62 | 45.0 | 5.04e-01 | 80.5% | 98.9% |
| 3601624 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.41e-01 | 75.4% | 79.0% |
| 3646890 | 4.25.1.1 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp | 0.60 | 41.0 | 4.68e-01 | 76.3% | 96.5% |
| 3992087 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.60 | 46.0 | 4.03e-01 | 79.7% | 76.5% |
| 3454181 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.60 | 44.0 | 3.75e-01 | 75.4% | 52.2% |
| 3889197 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 45.0 | 3.99e-01 | 79.7% | 74.1% |
| 4174957 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 49.0 | 4.13e-01 | 88.1% | 85.1% |
| 3233524 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 45.0 | 3.90e-01 | 78.8% | 73.7% |
| 3208838 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 48.0 | 4.42e-01 | 87.3% | 88.4% |
| 3629455 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 46.0 | 3.90e-01 | 81.4% | 66.8% |
| 3826525 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 49.0 | 3.43e-01 | 89.8% | 47.4% |
| 2672307 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 44.0 | 4.04e-01 | 79.7% | 73.1% |
| 3575867 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 43.0 | 4.11e-01 | 77.1% | 79.0% |
| 3334435 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 45.0 | 4.06e-01 | 80.5% | 92.3% |
| 3460287 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 44.0 | 3.93e-01 | 78.8% | 71.9% |
| 3823515 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 44.0 | 4.01e-01 | 79.7% | 89.7% |
| 3824811 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 44.0 | 4.04e-01 | 80.5% | 85.2% |
| 3908789 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.57 | 44.0 | 3.32e-01 | 80.5% | 63.2% |
| 3819710 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.57 | 49.0 | 4.06e-01 | 90.7% | 86.5% |
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.57 | 41.0 | 3.58e-01 | 73.7% | 50.3% |
| 3879755 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.57 | 38.0 | 4.00e-01 | 74.6% | 75.2% |
| 4229837 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.57 | 42.0 | 3.69e-01 | 78.8% | 97.8% |
| 4094583 | 101.33.1.3 ↗ | alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › BAH | 0.57 | 47.0 | 3.44e-01 | 89.8% | 51.4% |
| 3631731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.25e-01 | 86.4% | 88.7% |
| 3510024 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.57 | 41.0 | 4.25e-01 | 74.6% | 88.2% |
| 3411858 | 4.1.1.456 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 | 0.56 | 42.0 | 2.88e-01 | 78.8% | 27.6% |
| 3173893 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.56 | 45.0 | 3.50e-01 | 84.7% | 53.9% |
| 3242335 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.56 | 44.0 | 3.72e-01 | 83.9% | 83.6% |
| 3023952 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 41.0 | 4.25e-01 | 77.1% | 92.9% |
| None | — | 0.55 | 40.0 | 3.57e-01 | 76.3% | 64.7% | |
| 3501834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 36.0 | 4.18e-01 | 70.3% | 92.9% |
| 3670066 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 42.0 | 3.80e-01 | 82.2% | 69.0% |
| 3687023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 4.29e-01 | 78.8% | 100.0% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 40.0 | 3.83e-01 | 81.4% | 84.3% |
| 3683487 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.52 | 41.0 | 3.62e-01 | 83.1% | 87.4% |
| 3437290 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.51 | 39.0 | 3.26e-01 | 82.2% | 90.2% |
| 3550047 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.51 | 44.0 | 3.89e-01 | 93.2% | 86.5% |
| 3486847 | 4.1.1.284 ↗ | beta barrels › SH3 › SH3 › SH3 › SBNO | 0.51 | 33.0 | 3.44e-01 | 70.3% | 72.4% |
| 3870945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 44.0 | 3.66e-01 | 93.2% | 86.0% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 35.0 | 3.07e-01 | 71.2% | 83.3% |