←Back to structures
LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00288
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00288
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-105
Domain cluster:
rep: PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00182__D5-89
D2
high
residues 111-201
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 43.0 | 3.55e-01 | 96.7% | 94.8% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.51 | 38.0 | 3.39e-01 | 83.5% | 100.0% |
| 2ym9D00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.50 | 38.0 | 3.47e-01 | 81.3% | 68.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932124 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.54 | 41.0 | 3.13e-01 | 83.5% | 84.6% |
| 3545296 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 41.0 | 2.60e-01 | 82.4% | 54.8% |
| 3804485 | 129.1.1.105 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF28924 | 0.53 | 36.0 | 3.76e-01 | 71.4% | 91.8% |
| 3245228 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 2.54e-01 | 74.7% | 75.4% |
| 3716897 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.50 | 37.0 | 3.94e-01 | 78.0% | 98.7% |