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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00294
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00294
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78_157-166
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 4.03e-01 | 87.1% | 68.2% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 39.0 | 4.08e-01 | 85.9% | 75.9% |
| 1wfnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 4.01e-01 | 87.1% | 69.3% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 4.02e-01 | 85.9% | 72.9% |
| 1rhfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 3.57e-01 | 85.9% | 61.2% |
| 8bvoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 4.02e-01 | 87.1% | 73.3% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.67e-01 | 85.9% | 59.8% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.84e-01 | 88.2% | 63.7% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.87e-01 | 85.9% | 67.0% |
| 4yokA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 4.21e-01 | 89.4% | 72.4% |
| 2dmkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.93e-01 | 85.9% | 68.0% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.85e-01 | 85.9% | 71.6% |
| 4q66A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.59e-01 | 87.1% | 63.0% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.54 | 46.0 | 3.21e-01 | 95.3% | 30.9% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.88e-01 | 87.1% | 70.5% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 4.00e-01 | 87.1% | 74.1% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.74e-01 | 87.1% | 69.9% |
| 5e4sA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.86e-01 | 87.1% | 72.3% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.70e-01 | 100.0% | 69.5% |
| 4jklA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.53e-01 | 85.9% | 64.2% |
| 1b78A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.52 | 45.0 | 3.57e-01 | 100.0% | 53.8% |
| 1lwrA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.39e-01 | 85.9% | 62.5% |
| 4bnqB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.51 | 45.0 | 3.50e-01 | 100.0% | 57.3% |
| 5yxkA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.67e-01 | 84.7% | 70.0% |
| 3w6wB02 | 2.60.310.20 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › | 0.50 | 39.0 | 3.43e-01 | 87.1% | 73.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4142588 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.61 | 33.0 | 2.54e-01 | 89.4% | 24.3% |
| 3918202 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.58 | 39.0 | 3.49e-01 | 87.1% | 48.3% |
| 4024194 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 46.0 | 3.78e-01 | 90.6% | 58.0% |
| 3654212 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 30.0 | 2.54e-01 | 89.4% | 28.4% |
| 3526658 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 36.0 | 3.33e-01 | 88.2% | 50.8% |
| 3508957 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 43.0 | 3.72e-01 | 92.9% | 97.2% |
| 162283 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 41.0 | 3.69e-01 | 87.1% | 77.2% |
| 3383391 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 30.0 | 3.03e-01 | 92.9% | 54.5% |
| 4269616 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 37.0 | 2.42e-01 | 76.5% | 97.6% |
| 3247063 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.75e-01 | 87.1% | 69.5% |
| 5021275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 35.0 | 3.29e-01 | 85.9% | 55.5% |
| 3843400 | 11.1.1.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind | 0.51 | 40.0 | 3.68e-01 | 88.2% | 72.5% |
| 5046303 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.51 | 44.0 | 3.50e-01 | 100.0% | 53.2% |
| 4955346 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.77e-01 | 88.2% | 69.5% |
| 3816683 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.51 | 32.0 | 2.68e-01 | 100.0% | 33.5% |
| 3748702 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 2.84e-01 | 100.0% | 79.8% |
D2
high
residues 83-137
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3focA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 48.0 | 3.02e-01 | 90.9% | 15.5% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 45.0 | 4.14e-01 | 87.3% | 92.0% |
| 3vkhB01 | 1.10.287.2620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 42.0 | 4.08e-01 | 100.0% | 75.0% |
| 1o5wB03 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.56 | 45.0 | 3.88e-01 | 92.7% | 90.2% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 44.0 | 4.05e-01 | 100.0% | 76.2% |
| 5fcdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 44.0 | 2.98e-01 | 94.5% | 96.1% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.51 | 43.0 | 3.90e-01 | 98.2% | 87.3% |
| 2gpiA00 | 3.30.160.140 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like | 0.51 | 40.0 | 3.49e-01 | 90.9% | 89.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4162535 | 4205.1.1.5 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SUKH_6 | 0.75 | 57.0 | 4.16e-01 | 81.8% | 42.8% |
| 4933593 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 56.0 | 3.80e-01 | 100.0% | 56.3% |
| 3587164 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 39.0 | 3.87e-01 | 96.4% | 66.7% |
| 3989035 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.52 | 44.0 | 3.70e-01 | 94.5% | 78.9% |