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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00307
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00307
Identity
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-66
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.76 | 53.0 | 4.80e-01 | 72.6% | 89.0% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.72 | 60.0 | 4.62e-01 | 95.2% | 40.1% |
| 2ddhA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 64.0 | 4.95e-01 | 98.4% | 81.1% |
| 1szhA01 | 1.10.150.360 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.71 | 38.0 | 3.77e-01 | 96.8% | 49.2% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 61.0 | 4.28e-01 | 100.0% | 42.9% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 54.0 | 3.81e-01 | 80.6% | 42.4% |
| 1br2A04 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 54.0 | 3.99e-01 | 85.5% | 64.1% |
| 3lewA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 49.0 | 3.05e-01 | 77.4% | 14.3% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 57.0 | 4.04e-01 | 100.0% | 31.3% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 48.0 | 3.91e-01 | 74.2% | 46.5% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 50.0 | 4.17e-01 | 80.6% | 52.8% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 45.0 | 3.56e-01 | 74.2% | 37.9% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 53.0 | 4.34e-01 | 90.3% | 70.2% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 46.0 | 4.59e-01 | 75.8% | 72.3% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.64 | 54.0 | 4.16e-01 | 98.4% | 42.3% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.64 | 54.0 | 4.61e-01 | 95.2% | 76.5% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 44.0 | 3.76e-01 | 79.0% | 46.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.62 | 49.0 | 4.23e-01 | 85.5% | 76.0% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.61 | 57.0 | 4.51e-01 | 100.0% | 58.6% |
| 2o36A02 | 1.10.1370.10 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Neurolysin, domain 3 | 0.60 | 53.0 | 3.28e-01 | 98.4% | 59.7% |
| 2cufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 45.0 | 4.33e-01 | 90.3% | 72.2% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.58 | 40.0 | 4.00e-01 | 72.6% | 74.2% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.58 | 52.0 | 3.85e-01 | 100.0% | 80.6% |
| 2l95A00 | 1.10.287.2250 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 46.0 | 4.30e-01 | 91.9% | 71.2% |
| 4iv6B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 39.0 | 3.29e-01 | 79.0% | 38.8% |
| 6j8eA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 48.0 | 4.12e-01 | 98.4% | 93.4% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 50.0 | 4.72e-01 | 100.0% | 95.9% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.56 | 36.0 | 3.30e-01 | 100.0% | 47.6% |
| 1v9mA03 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.55 | 43.0 | 3.72e-01 | 83.9% | 100.0% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 40.0 | 3.61e-01 | 95.2% | 54.3% |
| 2qq8A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.54 | 40.0 | 3.58e-01 | 100.0% | 53.1% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 45.0 | 4.59e-01 | 93.5% | 95.2% |
| 3mpiA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 39.0 | 3.18e-01 | 79.0% | 80.2% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 39.0 | 2.93e-01 | 83.9% | 87.0% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.52 | 38.0 | 3.74e-01 | 77.4% | 73.1% |
| 3npiB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 44.0 | 3.14e-01 | 100.0% | 61.0% |
| 3hz6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 2.70e-01 | 85.5% | 49.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3755586 | 3291.1.1.118 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF9 | 0.82 | 63.0 | 4.71e-01 | 80.6% | 40.7% |
| 3541873 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.81 | 62.0 | 4.67e-01 | 80.6% | 40.7% |
| 3912535 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.81 | 62.0 | 4.25e-01 | 80.6% | 33.8% |
| 5034026 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.81 | 65.0 | 5.44e-01 | 87.1% | 68.6% |
| 3966348 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.81 | 65.0 | 5.86e-01 | 87.1% | 75.3% |
| 3685493 | 605.2.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › DUF7785 | 0.81 | 61.0 | 5.40e-01 | 79.0% | 65.9% |
| 3585004 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.78 | 67.0 | 5.23e-01 | 95.2% | 96.9% |
| 3577589 | 150.1.1.100 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TMD0_ABC | 0.77 | 62.0 | 4.46e-01 | 87.1% | 75.9% |
| 3999274 | 5086.1.1.102 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp | 0.76 | 58.0 | 4.77e-01 | 80.6% | 56.2% |
| 3624720 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.75 | 54.0 | 3.71e-01 | 75.8% | 27.0% |
| 3690029 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.74 | 56.0 | 4.01e-01 | 80.6% | 76.6% |
| 3245544 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 55.0 | 4.42e-01 | 79.0% | 50.4% |
| 4981035 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.73 | 64.0 | 6.28e-01 | 93.5% | 90.8% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.73 | 58.0 | 5.60e-01 | 85.5% | 80.0% |
| 4931046 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.73 | 65.0 | 5.98e-01 | 98.4% | 76.2% |
| 3682039 | 604.1.1.188 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr | 0.72 | 54.0 | 4.42e-01 | 79.0% | 60.0% |
| 5046013 | 5039.1.1.0 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like | 0.72 | 53.0 | 4.05e-01 | 79.0% | 38.5% |
| 3476880 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.72 | 59.0 | 4.16e-01 | 91.9% | 63.0% |
| 3337878 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.72 | 65.0 | 5.24e-01 | 100.0% | 54.8% |
| 3278686 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.71 | 62.0 | 5.47e-01 | 95.2% | 92.2% |
| 3233589 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 54.0 | 5.08e-01 | 80.6% | 86.7% |
| 3651438 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 53.0 | 4.35e-01 | 79.0% | 56.4% |
| 4095063 | 5086.1.1.69 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Med29 | 0.70 | 53.0 | 4.36e-01 | 79.0% | 46.4% |
| 3164721 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.70 | 58.0 | 5.28e-01 | 98.4% | 81.1% |
| 3167929 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.70 | 48.0 | 4.58e-01 | 71.0% | 62.9% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.70 | 53.0 | 5.23e-01 | 83.9% | 83.1% |
| 4030141 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.70 | 63.0 | 5.17e-01 | 100.0% | 61.8% |
| 4015520 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.69 | 64.0 | 4.60e-01 | 100.0% | 96.4% |
| 3597909 | 5094.1.1.0 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like | 0.69 | 62.0 | 4.97e-01 | 100.0% | 51.7% |
| 3190617 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.68 | 63.0 | 3.98e-01 | 98.4% | 87.6% |
| 3722755 | 109.4.1.903 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28 | 0.65 | 45.0 | 2.81e-01 | 74.2% | 13.7% |
| None | — | 0.64 | 55.0 | 3.54e-01 | 100.0% | 75.3% | |
| 3586081 | 150.1.1.104 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor | 0.62 | 52.0 | 4.42e-01 | 100.0% | 93.0% |
| 4965739 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.61 | 52.0 | 4.90e-01 | 100.0% | 100.0% |
| 5040221 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.61 | 48.0 | 3.09e-01 | 85.5% | 41.0% |
| 4530254 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.60 | 55.0 | 3.18e-01 | 100.0% | 32.5% |
| 3937524 | 148.1.3.178 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA | 0.60 | 53.0 | 3.29e-01 | 98.4% | 17.7% |
| 4107066 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.60 | 55.0 | 3.16e-01 | 100.0% | 32.5% |
| 3223029 | 364.1.1.1 ↗ | few secondary structure elements › TAZ domain › TAZ domain › TAZ domain › zf-TAZ | 0.59 | 50.0 | 4.30e-01 | 95.2% | 97.0% |
| 5017844 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.59 | 44.0 | 3.65e-01 | 82.3% | 58.3% |
| 4024379 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.58 | 46.0 | 2.66e-01 | 95.2% | 8.6% |
| 3023635 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.56 | 39.0 | 3.54e-01 | 72.6% | 53.5% |
| 3378485 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 44.0 | 2.88e-01 | 93.5% | 22.3% |
| 3706420 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.51 | 43.0 | 3.25e-01 | 95.2% | 38.7% |