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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00318
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00318
Identity
- Kingdom:
- phage
Quality
67.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-104
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 52.0 | 6.09e-01 | 88.5% | 97.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 48.0 | 5.66e-01 | 87.5% | 100.0% |
| 4kbmB01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 42.0 | 5.20e-01 | 80.2% | 100.0% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 48.0 | 5.48e-01 | 88.5% | 95.7% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.71 | 54.0 | 5.32e-01 | 90.6% | 75.0% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 45.0 | 5.32e-01 | 88.5% | 95.4% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 51.0 | 5.77e-01 | 87.5% | 100.0% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 51.0 | 5.20e-01 | 92.7% | 82.6% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 40.0 | 4.94e-01 | 71.9% | 100.0% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 5.08e-01 | 85.4% | 94.7% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.64 | 55.0 | 4.77e-01 | 92.7% | 80.0% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 55.0 | 4.95e-01 | 95.8% | 84.1% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 49.0 | 4.50e-01 | 81.2% | 76.9% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 48.0 | 4.22e-01 | 81.2% | 76.6% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 42.0 | 4.74e-01 | 87.5% | 95.7% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.61 | 36.0 | 3.60e-01 | 78.1% | 55.4% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 40.0 | 4.35e-01 | 83.3% | 82.3% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 52.0 | 4.15e-01 | 97.9% | 76.5% |
| 2f8xC02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 44.0 | 3.75e-01 | 80.2% | 98.1% |
| 1u04A02 | 3.90.70.180 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 45.0 | 4.30e-01 | 86.5% | 100.0% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 45.0 | 4.25e-01 | 85.4% | 96.5% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 47.0 | 4.58e-01 | 92.7% | 86.1% |
| 4innA00 | 2.40.128.520 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 47.0 | 4.05e-01 | 89.6% | 90.4% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 3.75e-01 | 78.1% | 99.2% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.56 | 38.0 | 3.18e-01 | 70.8% | 46.9% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.55 | 45.0 | 4.47e-01 | 90.6% | 87.5% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.55 | 45.0 | 4.62e-01 | 89.6% | 100.0% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.55 | 45.0 | 4.42e-01 | 90.6% | 94.3% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 36.0 | 3.61e-01 | 70.8% | 71.6% |
| 4l8jA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.53 | 44.0 | 4.43e-01 | 90.6% | 96.8% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 41.0 | 3.98e-01 | 81.2% | 93.5% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.53 | 40.0 | 4.07e-01 | 80.2% | 93.4% |
| 1a90A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 38.0 | 3.74e-01 | 79.2% | 85.2% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.51e-01 | 80.2% | 88.2% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 38.0 | 3.53e-01 | 79.2% | 92.1% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.50 | 43.0 | 3.67e-01 | 100.0% | 61.0% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.50 | 40.0 | 4.26e-01 | 93.8% | 100.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975150 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 52.0 | 6.52e-01 | 86.5% | 98.3% |
| 5025079 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.85 | 49.0 | 6.22e-01 | 83.3% | 100.0% |
| 4990212 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 48.0 | 6.23e-01 | 82.3% | 100.0% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 46.0 | 6.04e-01 | 85.4% | 96.4% |
| 4015071 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 53.0 | 6.15e-01 | 86.5% | 90.0% |
| 4011604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.82 | 55.0 | 6.17e-01 | 86.5% | 88.0% |
| 4980648 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 51.0 | 5.88e-01 | 85.4% | 88.6% |
| 3570399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 51.0 | 6.03e-01 | 86.5% | 95.4% |
| 5060760 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.79 | 49.0 | 5.91e-01 | 85.4% | 93.8% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 5.35e-01 | 86.5% | 83.5% |
| 3723834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 49.0 | 5.54e-01 | 82.3% | 98.6% |
| 3691144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 48.0 | 5.50e-01 | 82.3% | 98.6% |
| 3830352 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.69 | 56.0 | 5.87e-01 | 88.5% | 97.6% |
| 3187511 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.64 | 52.0 | 4.70e-01 | 88.5% | 97.7% |
| 3738927 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.63 | 52.0 | 4.79e-01 | 89.6% | 97.6% |
| 1144815 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.63 | 47.0 | 5.11e-01 | 89.6% | 96.2% |
| 3736916 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 4.57e-01 | 97.9% | 80.0% |
| 4257969 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 48.0 | 4.33e-01 | 86.5% | 76.7% |
| 4013325 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.59 | 52.0 | 4.83e-01 | 100.0% | 95.2% |
| 3253266 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 47.0 | 4.60e-01 | 97.9% | 79.0% |
| 4391878 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.59 | 51.0 | 4.34e-01 | 94.8% | 75.5% |
| 3612351 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 42.0 | 4.68e-01 | 79.2% | 97.3% |
| 3183093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.44e-01 | 93.8% | 68.6% |
| 3388188 | 206.1.3.43 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF6815 | 0.59 | 52.0 | 3.92e-01 | 100.0% | 49.2% |
| 3941958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 47.0 | 4.88e-01 | 89.6% | 93.3% |
| 4266069 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.58 | 46.0 | 4.49e-01 | 85.4% | 100.0% |
| 4097843 | 4.11.1.6 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 | 0.58 | 51.0 | 4.33e-01 | 99.0% | 80.0% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.58 | 48.0 | 4.29e-01 | 90.6% | 76.3% |
| 3451025 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.57 | 41.0 | 4.13e-01 | 76.0% | 85.0% |
| 4032674 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.57 | 48.0 | 4.33e-01 | 90.6% | 80.0% |
| 3174886 | 708.1.2.5 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Mss4 | 0.57 | 44.0 | 3.89e-01 | 82.3% | 78.6% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.57 | 48.0 | 4.44e-01 | 90.6% | 76.7% |
| 4946578 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.57 | 47.0 | 4.34e-01 | 88.5% | 99.2% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 50.0 | 4.58e-01 | 97.9% | 90.4% |
| 3971620 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.55 | 48.0 | 4.21e-01 | 97.9% | 76.0% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 31.0 | 4.00e-01 | 77.1% | 100.0% |
| 3939870 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 4.10e-01 | 91.7% | 80.8% |
| 5028171 | 3174.1.1.2 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_S8e | 0.53 | 41.0 | 3.63e-01 | 81.2% | 71.9% |
| 3199494 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.53 | 41.0 | 3.14e-01 | 89.6% | 36.4% |
| 3697318 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 41.0 | 4.27e-01 | 87.5% | 100.0% |
| 5075874 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 34.0 | 2.89e-01 | 77.1% | 39.4% |
| 3971757 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 43.0 | 4.08e-01 | 97.9% | 96.7% |