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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00337

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00337

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 61.0 4.43e-01 94.4% 48.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.70e-01 100.0% 86.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 57.0 5.47e-01 90.7% 84.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 44.0 3.54e-01 83.3% 32.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.26e-01 90.7% 87.2%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 42.0 2.44e-01 100.0% 6.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.45e-01 100.0% 79.2%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 3.84e-01 100.0% 68.6%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.90e-01 94.4% 91.2%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.64 37.0 2.56e-01 81.5% 16.0%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.64 54.0 3.83e-01 98.1% 88.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.63 51.0 3.98e-01 96.3% 95.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 53.0 3.79e-01 100.0% 36.4%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 48.0 3.16e-01 87.0% 79.0%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 40.0 3.76e-01 81.5% 53.0%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 39.0 3.51e-01 81.5% 44.9%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 4.16e-01 100.0% 88.5%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.61 50.0 3.79e-01 100.0% 62.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 52.0 4.03e-01 100.0% 63.8%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 50.0 3.74e-01 100.0% 86.7%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.59 45.0 3.90e-01 85.2% 64.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.53e-01 83.3% 83.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 39.0 4.13e-01 81.5% 84.8%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 40.0 3.33e-01 74.1% 56.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.13e-01 72.2% 36.9%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 36.0 3.25e-01 79.6% 44.2%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.30e-01 90.7% 37.4%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.69e-01 85.2% 34.1%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 44.0 3.08e-01 92.6% 34.5%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 2.64e-01 85.2% 34.6%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 37.0 2.41e-01 70.4% 59.6%
1c3gA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.54 44.0 4.05e-01 100.0% 85.9%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 3.16e-01 100.0% 48.6%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.53 30.0 2.79e-01 75.9% 38.2%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 34.0 3.17e-01 81.5% 46.7%
1bvuA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 41.0 3.06e-01 87.0% 87.7%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.71e-01 90.7% 46.2%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.46e-01 85.2% 31.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.11e-01 88.9% 93.7%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 2.80e-01 100.0% 97.9%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 2.77e-01 100.0% 36.5%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 39.0 2.55e-01 92.6% 96.9%
1i5pA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 38.0 2.59e-01 81.5% 74.7%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 41.0 2.88e-01 94.4% 69.3%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 2.43e-01 94.4% 46.5%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.14e-01 90.7% 42.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 59.0 4.74e-01 90.7% 45.5%
4932882 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.68 58.0 4.46e-01 100.0% 63.0%
3636807 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.66 56.0 3.60e-01 100.0% 80.7%
4960051 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 55.0 3.95e-01 100.0% 50.6%
3247288 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.65 44.0 2.96e-01 72.2% 71.4%
4137758 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.64 41.0 4.28e-01 79.6% 70.0%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 51.0 4.89e-01 88.9% 82.5%
4967405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 3.60e-01 79.6% 61.9%
3460576 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.61 45.0 2.87e-01 83.3% 16.5%
3243256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 3.63e-01 100.0% 30.3%
3907134 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 50.0 3.43e-01 100.0% 43.2%
3894729 4.1.1.461 beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.60 47.0 4.08e-01 90.7% 83.3%
3972588 2498.1.1.31 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 0.59 49.0 3.21e-01 96.3% 65.3%
3597361 4.23.1.0 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.58 51.0 3.90e-01 100.0% 56.2%
4530545 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 47.0 3.96e-01 90.7% 78.9%
3639466 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 49.0 3.63e-01 96.3% 42.1%
4399128 7581.1.1.30 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.58 43.0 2.65e-01 83.3% 55.4%
3918340 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 46.0 4.22e-01 87.0% 72.9%
3741565 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.58 46.0 3.49e-01 88.9% 47.7%
4114383 4.8.1.47 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.57 46.0 4.03e-01 90.7% 87.1%
None 0.57 41.0 2.60e-01 77.8% 25.5%
5012554 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.13e-01 92.6% 78.0%
3387236 2004.1.1.220 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.56 45.0 3.04e-01 90.7% 44.9%
3550699 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.56 46.0 3.96e-01 98.1% 65.3%
3401903 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 45.0 3.64e-01 90.7% 45.5%
3194238 2006.1.4.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.56 39.0 2.59e-01 74.1% 63.7%
3913149 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 47.0 3.53e-01 100.0% 83.3%
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 47.0 4.06e-01 100.0% 60.0%
3249352 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 3.66e-01 100.0% 58.5%
3743393 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.55 37.0 2.25e-01 72.2% 9.2%
3625971 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.55 47.0 3.52e-01 100.0% 85.5%
3818311 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.55 48.0 3.45e-01 100.0% 83.7%
5056444 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.55 44.0 2.76e-01 94.4% 16.8%
3924339 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.55 45.0 2.55e-01 100.0% 46.8%
4883006 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.54 43.0 2.88e-01 88.9% 63.9%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 2.43e-01 83.3% 70.0%
3838659 5085.1.1.0 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 42.0 2.58e-01 90.7% 59.0%
3906518 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.19e-01 87.0% 64.4%
4241225 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 38.0 2.34e-01 77.8% 12.5%
3634173 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.54 45.0 3.36e-01 100.0% 84.5%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.53 32.0 2.81e-01 77.8% 35.3%
7696 812.2.1.1 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.53 29.0 2.76e-01 75.9% 37.1%
3891434 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 44.0 3.36e-01 100.0% 87.1%
3347601 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 43.0 3.25e-01 100.0% 85.8%
3695569 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 41.0 2.84e-01 92.6% 35.3%
3355880 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 41.0 2.59e-01 92.6% 89.1%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.52 45.0 3.56e-01 100.0% 87.0%
3974359 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 39.0 3.26e-01 90.7% 43.5%
3490141 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 43.0 3.27e-01 100.0% 84.8%
423731 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.51 42.0 2.35e-01 92.6% 31.2%
3589333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.63e-01 100.0% 70.5%
3647962 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 41.0 3.14e-01 96.3% 89.0%
5078649 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 38.0 2.73e-01 88.9% 26.5%
3649881 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.51 43.0 3.77e-01 100.0% 81.2%
3213645 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.50 40.0 2.74e-01 96.3% 52.8%
3241422 3755.3.1.627 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CNH 0.50 42.0 2.45e-01 98.1% 11.5%