←Back to structures
LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00374
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00374
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-157
Domain cluster:
rep: KC862298.1__AGR89222.1__PAK_P200101__00102__D3-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17338.9 best | GP88 | 123.6 | 1.60e-35 | 98.1% | 67.1% |
D2
medium
residues 158-229
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vg0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 34.0 | 2.63e-01 | 72.2% | 91.7% |
| 2esnA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.52e-01 | 88.9% | 100.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964689 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.52 | 41.0 | 2.96e-01 | 90.3% | 96.7% |
| 3314065 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 37.0 | 2.93e-01 | 76.4% | 60.3% |
| 2142018 | 2007.12.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain | 0.52 | 41.0 | 3.29e-01 | 94.4% | 84.8% |
| 4502537 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.52 | 42.0 | 3.17e-01 | 91.7% | 93.6% |