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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00392

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00392

Identity

Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-88
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.51 38.0 3.50e-01 86.8% 74.7%
D2 medium residues 89-150
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.55e-01 96.8% 67.8%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 3.74e-01 88.7% 80.8%
2x24A02 2.40.460.10 Mainly Beta › Beta Barrel › ClpP/crotonase fold › Biotin dependent carboxylase carboxyltransferase 0.54 41.0 4.06e-01 85.5% 84.8%
1ajaB00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.54 39.0 2.40e-01 79.0% 78.3%
5f9eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 3.62e-01 100.0% 81.3%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.53 36.0 2.76e-01 74.2% 75.2%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 44.0 3.57e-01 100.0% 93.9%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.52 40.0 3.86e-01 90.3% 73.6%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 39.0 3.11e-01 87.1% 81.5%
4le7A01 2.90.10.30 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › 0.51 36.0 2.81e-01 79.0% 93.6%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.16e-01 100.0% 60.3%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 36.0 2.23e-01 80.6% 32.0%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 37.0 2.97e-01 100.0% 34.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3332390 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.56 48.0 3.41e-01 96.8% 67.4%
5050065 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 34.0 3.05e-01 100.0% 41.1%
4975584 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 34.0 3.34e-01 100.0% 55.7%
3579622 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 36.0 3.06e-01 72.6% 65.5%
5062815 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.52 44.0 3.78e-01 100.0% 77.1%
3952348 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 37.0 2.80e-01 82.3% 78.9%
3966381 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 37.0 2.35e-01 82.3% 86.4%