Back to structures

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00465

Bact-Vir

LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00465

Identity

Kingdom:
phage

Quality

71.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 60.0 6.68e-01 95.9% 100.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 63.0 6.61e-01 100.0% 100.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 49.0 4.96e-01 100.0% 68.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 4.92e-01 100.0% 69.0%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 42.0 4.11e-01 90.4% 53.8%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.36e-01 100.0% 93.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.46e-01 100.0% 77.4%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.63 42.0 3.74e-01 91.8% 49.5%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.02e-01 80.8% 98.8%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.80e-01 82.2% 48.3%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 39.0 4.28e-01 91.8% 82.8%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 45.0 3.36e-01 79.5% 78.5%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.60e-01 94.5% 92.6%
2r6uA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.60e-01 76.7% 100.0%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.78e-01 72.6% 75.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 3.17e-01 90.4% 94.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.58e-01 93.2% 95.4%
7w6zA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 52.0 4.81e-01 100.0% 93.6%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 4.10e-01 89.0% 77.6%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.58 41.0 3.92e-01 76.7% 88.6%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.56 46.0 3.78e-01 94.5% 75.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.08e-01 93.2% 78.0%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.55 41.0 3.14e-01 80.8% 92.7%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.01e-01 95.9% 84.0%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.24e-01 76.7% 83.9%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.78e-01 94.5% 90.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.20e-01 93.2% 94.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 3.99e-01 97.3% 77.7%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 4.05e-01 100.0% 98.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.99e-01 95.9% 86.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 41.0 4.24e-01 87.7% 88.7%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 4.20e-01 93.2% 92.1%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 45.0 3.63e-01 95.9% 81.6%
3e3uA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 44.0 3.29e-01 97.3% 69.9%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 45.0 2.96e-01 97.3% 29.5%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.87e-01 100.0% 96.8%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 46.0 2.97e-01 97.3% 28.4%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 45.0 4.15e-01 97.3% 87.2%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.91e-01 84.9% 94.0%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 4.02e-01 94.5% 92.7%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 2.84e-01 98.6% 38.0%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 42.0 3.65e-01 93.2% 66.9%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 43.0 3.43e-01 100.0% 72.1%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.49e-01 97.3% 53.4%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 42.0 2.83e-01 91.8% 34.7%
4ix3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 41.0 3.55e-01 89.0% 80.5%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.47e-01 93.2% 74.6%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 3.17e-01 82.2% 87.0%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 3.97e-01 93.2% 87.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.78 51.0 5.40e-01 100.0% 76.6%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 58.0 6.15e-01 100.0% 93.7%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.18e-01 100.0% 87.3%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.72 63.0 5.76e-01 98.6% 73.7%
4386715 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 64.0 6.10e-01 100.0% 88.2%
4340107 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 6.12e-01 100.0% 96.0%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.69 51.0 5.35e-01 100.0% 89.2%
4000858 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 54.0 5.59e-01 100.0% 88.6%
3626068 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.65e-01 97.3% 98.3%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 43.0 3.67e-01 100.0% 39.2%
3700781 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.68 46.0 3.75e-01 95.9% 39.2%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 48.0 3.96e-01 74.0% 85.3%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 43.0 4.86e-01 100.0% 94.0%
3715828 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 59.0 5.74e-01 100.0% 91.3%
3707023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.31e-01 100.0% 79.0%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 47.0 4.02e-01 76.7% 87.5%
4185893 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.65 52.0 5.44e-01 97.3% 98.5%
4998344 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 46.0 3.80e-01 75.3% 79.1%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.64 53.0 5.15e-01 100.0% 83.7%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.47e-01 100.0% 93.8%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 51.0 5.18e-01 100.0% 91.4%
3887433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.86e-01 100.0% 97.4%
4614716 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.63 52.0 5.28e-01 98.6% 97.1%
3970503 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 47.0 3.92e-01 80.8% 87.6%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.63 50.0 4.74e-01 100.0% 73.3%
3509036 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.55e-01 97.3% 69.6%
5065013 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 47.0 3.70e-01 82.2% 83.1%
3701345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.15e-01 98.6% 87.5%
3991896 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 47.0 4.41e-01 100.0% 66.3%
4366434 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 43.0 4.37e-01 87.7% 75.7%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 53.0 5.30e-01 100.0% 97.3%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.70e-01 82.2% 78.5%
4190716 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 44.0 3.85e-01 80.8% 80.9%
3570527 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.09e-01 93.2% 70.8%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 44.0 3.77e-01 80.8% 84.2%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 46.0 3.68e-01 84.9% 44.1%
3908519 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 48.0 4.13e-01 94.5% 72.8%
3916003 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.58 48.0 4.20e-01 94.5% 76.5%
4127839 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 37.0 3.69e-01 90.4% 64.0%
3392597 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 48.0 4.02e-01 97.3% 74.8%
3438797 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 50.0 3.15e-01 97.3% 28.7%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.44e-01 100.0% 88.6%
3673266 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 4.02e-01 82.2% 75.3%
3975862 220.1.1.104 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.54 48.0 4.65e-01 97.3% 92.5%
4023413 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 48.0 3.05e-01 97.3% 23.9%
3540753 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.54 47.0 3.11e-01 95.9% 29.0%
2759872 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.54 48.0 3.21e-01 97.3% 32.0%
3619978 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 47.0 3.00e-01 95.9% 23.2%
3911248 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 46.0 4.39e-01 100.0% 91.1%
3490423 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.54 47.0 3.03e-01 95.9% 26.3%
3883849 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 46.0 3.07e-01 95.9% 29.3%
3927695 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 2.99e-01 97.3% 25.7%
3176674 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 2.88e-01 97.3% 22.2%
3931872 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.94e-01 97.3% 33.2%
3390473 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.95e-01 95.9% 82.9%
3250440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.51e-01 91.8% 87.4%
3255173 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 42.0 3.68e-01 91.8% 84.3%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.52 44.0 3.66e-01 100.0% 53.8%
4506585 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 42.0 3.30e-01 90.4% 65.8%
3702551 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 45.0 2.80e-01 97.3% 24.7%
3558025 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 2.83e-01 95.9% 23.3%
3957296 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 42.0 3.35e-01 91.8% 91.3%
3601721 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.50 40.0 3.34e-01 91.8% 82.9%