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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00480
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00480
Identity
- Kingdom:
- phage
Quality
80.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-120
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 33.3 | 6.50e-08 | 90.7% | 87.2% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.95 | 77.0 | 7.95e-01 | 90.7% | 88.0% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 56.0 | 5.82e-01 | 100.0% | 88.8% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 45.0 | 4.49e-01 | 80.4% | 75.5% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 38.0 | 3.92e-01 | 78.4% | 67.0% |
| 2qpqA01 | 3.40.190.150 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 | 0.60 | 36.0 | 2.97e-01 | 100.0% | 34.3% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.59 | 38.0 | 4.51e-01 | 82.5% | 97.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 43.0 | 4.18e-01 | 81.4% | 68.5% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 43.0 | 3.84e-01 | 80.4% | 56.8% |
| 3wcyA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 4.07e-01 | 78.4% | 77.9% |
| 3lzqA00 | 2.60.40.2480 | Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type | 0.56 | 44.0 | 3.78e-01 | 84.5% | 78.3% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.56 | 41.0 | 4.11e-01 | 79.4% | 75.8% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 40.0 | 4.09e-01 | 79.4% | 77.9% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.03e-01 | 78.4% | 82.5% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 4.12e-01 | 88.7% | 86.0% |
| 6m3yA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.19e-01 | 81.4% | 53.0% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.92e-01 | 91.8% | 84.5% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.52 | 33.0 | 3.64e-01 | 93.8% | 80.8% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.52 | 38.0 | 3.59e-01 | 80.4% | 62.5% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.87e-01 | 83.5% | 78.9% |
| 5e53A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 4.02e-01 | 91.8% | 84.9% |
| 3qt2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.81e-01 | 91.8% | 76.5% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 36.0 | 3.21e-01 | 74.2% | 75.8% |
| 3f7eA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 40.0 | 3.72e-01 | 86.6% | 81.2% |
| 2z5bA00 | 3.30.230.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 35.0 | 3.24e-01 | 71.1% | 98.4% |
| 3hrdB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.50 | 37.0 | 3.28e-01 | 78.4% | 93.3% |
| 4dohE02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.94e-01 | 85.6% | 79.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.95 | 78.0 | 7.95e-01 | 93.8% | 87.2% |
| 4669741 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.80 | 56.0 | 5.72e-01 | 91.8% | 73.7% |
| 3666940 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.80 | 58.0 | 5.36e-01 | 100.0% | 60.8% |
| 4677975 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.80 | 75.0 | 6.98e-01 | 100.0% | 87.3% |
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.79 | 74.0 | 6.61e-01 | 100.0% | 80.8% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.78 | 60.0 | 6.41e-01 | 99.0% | 91.8% |
| 3365225 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.78 | 56.0 | 5.23e-01 | 100.0% | 60.8% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.77 | 57.0 | 5.93e-01 | 100.0% | 84.1% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.77 | 60.0 | 6.39e-01 | 100.0% | 92.9% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.77 | 62.0 | 6.41e-01 | 100.0% | 91.1% |
| 3363261 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.76 | 58.0 | 5.17e-01 | 91.8% | 57.8% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.76 | 60.0 | 6.28e-01 | 100.0% | 91.1% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.75 | 60.0 | 5.61e-01 | 100.0% | 68.9% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.75 | 60.0 | 6.24e-01 | 100.0% | 92.2% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 56.0 | 5.72e-01 | 100.0% | 81.1% |
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.74 | 40.0 | 5.15e-01 | 79.4% | 94.5% |
| 3838723 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.69 | 61.0 | 5.19e-01 | 100.0% | 84.2% |
| 4004207 | 11.1.4.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th | 0.67 | 36.0 | 3.94e-01 | 76.3% | 63.7% |
| 3937887 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.64 | 35.0 | 3.85e-01 | 74.2% | 65.0% |
| 146929 | 3115.3.1.1 ↗ | a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 | 0.63 | 33.0 | 4.12e-01 | 71.1% | 85.7% |
| 4807171 | 5089.1.1.1 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin | 0.60 | 46.0 | 3.34e-01 | 82.5% | 53.8% |
| 4927132 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.59 | 38.0 | 3.84e-01 | 70.1% | 65.3% |
| 5041000 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.57 | 33.0 | 3.46e-01 | 75.3% | 61.1% |
| 3427385 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 32.0 | 3.54e-01 | 80.4% | 69.3% |
| 223777 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.56 | 37.0 | 4.12e-01 | 93.8% | 88.0% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.56 | 32.0 | 3.49e-01 | 71.1% | 69.3% |
| 3286417 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 44.0 | 4.07e-01 | 85.6% | 81.6% |
| 4102844 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.55 | 40.0 | 3.85e-01 | 75.3% | 68.2% |
| 4078982 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.54 | 40.0 | 3.71e-01 | 79.4% | 68.5% |
| 4847420 | 5089.1.1.1 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin | 0.54 | 40.0 | 3.01e-01 | 79.4% | 48.4% |
| 4858277 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 39.0 | 4.13e-01 | 80.4% | 85.2% |
| 3958368 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 4.03e-01 | 78.4% | 88.9% |
| 3387649 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 40.0 | 3.58e-01 | 81.4% | 69.6% |
| 4086703 | 11.1.1.994 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30427 | 0.52 | 39.0 | 3.86e-01 | 78.4% | 85.0% |
| 4022609 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.51 | 40.0 | 3.50e-01 | 93.8% | 55.9% |
| 3888093 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.86e-01 | 81.4% | 81.1% |
| 5035692 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.35e-01 | 75.3% | 70.4% |
D2
high
residues 319-395
Domain cluster:
representative
D3
high
residues 408-506
Domain cluster:
rep: gwa1_scaffold_0_prodigal-single.1__X__X__00404__D55-146
D4
medium
residues 162-302
Domain cluster:
representative