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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00507
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00507
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-100
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.77 | 72.0 | 6.06e-01 | 100.0% | 87.2% |
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.76 | 27.0 | 4.40e-01 | 79.8% | 100.0% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.76 | 70.0 | 5.79e-01 | 100.0% | 79.0% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.74 | 68.0 | 5.63e-01 | 100.0% | 80.0% |
| 2w91A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 41.0 | 3.98e-01 | 83.0% | 60.2% |
| 2p4bB02 | 3.30.200.100 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain | 0.62 | 40.0 | 3.97e-01 | 98.9% | 62.2% |
| 6hyfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 39.0 | 3.81e-01 | 83.0% | 56.6% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 33.0 | 2.84e-01 | 100.0% | 35.3% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 41.0 | 4.12e-01 | 85.1% | 66.7% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 38.0 | 4.50e-01 | 81.9% | 90.8% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.61 | 52.0 | 4.20e-01 | 94.7% | 49.4% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.61 | 52.0 | 5.25e-01 | 95.7% | 91.6% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 39.0 | 3.90e-01 | 83.0% | 65.3% |
| 2jn9A01 | 2.40.30.80 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YkvR-like | 0.57 | 49.0 | 5.04e-01 | 100.0% | 98.9% |
| 1mvpA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 47.0 | 4.48e-01 | 95.7% | 76.8% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 31.0 | 3.68e-01 | 89.4% | 78.8% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 42.0 | 3.27e-01 | 83.0% | 57.5% |
| 1vi7A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.54e-01 | 87.2% | 73.2% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.53 | 45.0 | 4.40e-01 | 100.0% | 83.0% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.51e-01 | 87.2% | 69.4% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 3.87e-01 | 97.9% | 81.2% |
| 2laeA00 | 3.30.310.170 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC | 0.52 | 41.0 | 3.85e-01 | 86.2% | 78.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.76 | 70.0 | 5.79e-01 | 100.0% | 79.0% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.75 | 69.0 | 5.90e-01 | 100.0% | 86.9% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.75 | 69.0 | 6.20e-01 | 100.0% | 86.6% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 68.0 | 5.64e-01 | 100.0% | 80.0% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.73 | 67.0 | 5.68e-01 | 100.0% | 88.6% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.69 | 62.0 | 5.42e-01 | 100.0% | 89.4% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 62.0 | 5.54e-01 | 100.0% | 96.2% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 61.0 | 5.24e-01 | 100.0% | 95.3% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 61.0 | 5.17e-01 | 100.0% | 87.1% |
| 4959581 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 55.0 | 4.37e-01 | 100.0% | 43.7% |
| 3281300 | 4.1.1.426 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31188 | 0.67 | 30.0 | 3.52e-01 | 94.7% | 58.5% |
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 58.0 | 5.31e-01 | 98.9% | 95.2% |
| 3943691 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.64 | 57.0 | 5.69e-01 | 96.8% | 97.9% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.63 | 55.0 | 4.97e-01 | 100.0% | 92.6% |
| 3385857 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 41.0 | 4.22e-01 | 88.3% | 68.9% |
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 55.0 | 5.09e-01 | 100.0% | 77.6% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 53.0 | 5.00e-01 | 100.0% | 75.7% |
| 3967435 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.63 | 55.0 | 5.50e-01 | 98.9% | 95.8% |
| 3913172 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 48.0 | 3.69e-01 | 100.0% | 35.4% |
| 3595017 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.60 | 34.0 | 2.71e-01 | 81.9% | 28.3% |
| 4949262 | 1.1.9.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 | 0.60 | 53.0 | 3.94e-01 | 100.0% | 44.8% |
| 4809346 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.59 | 48.0 | 4.98e-01 | 88.3% | 100.0% |
| 3977382 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.58 | 51.0 | 5.09e-01 | 97.9% | 100.0% |
| 3724681 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 44.0 | 4.26e-01 | 96.8% | 71.4% |
| 4846313 | 1075.1.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG | 0.58 | 36.0 | 3.70e-01 | 93.6% | 65.2% |
| 3933059 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 38.0 | 3.56e-01 | 81.9% | 58.3% |
| 3707291 | 11.1.1.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 | 0.55 | 39.0 | 3.45e-01 | 84.0% | 50.7% |
| 5072652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.80e-01 | 83.0% | 65.5% |
| 3279541 | 10.37.1.1 ↗ | beta sandwiches › jelly-roll › TerD › TerD › TerD | 0.50 | 43.0 | 3.78e-01 | 93.6% | 91.4% |
| 3471318 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 35.0 | 3.51e-01 | 93.6% | 70.0% |