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LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00551
Bact-VirLacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00551
Identity
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-126_142-164
D2
medium
residues 176-354
Domain cluster:
rep: KC862298.1__AGR89222.1__PAK_P200101__00102__D3-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17338.9 best | GP88 | 82.6 | 5.30e-23 | 93.3% | 60.2% |
D3
medium
residues 355-461
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00385__D355-449
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3quvA01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.55 | 45.0 | 3.98e-01 | 91.6% | 92.7% |
| 1cg2A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 43.0 | 3.29e-01 | 88.8% | 84.2% |
| 3ksmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 44.0 | 3.90e-01 | 87.9% | 93.3% |
| 3ec4B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.41e-01 | 91.6% | 95.1% |
| 2r47A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 41.0 | 3.84e-01 | 88.8% | 100.0% |
| 4qgsA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 43.0 | 3.73e-01 | 95.3% | 97.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266672 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 41.0 | 3.07e-01 | 74.8% | 67.1% |
| 4944994 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.55 | 25.0 | 3.16e-01 | 89.7% | 70.0% |
| 4985673 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 29.0 | 3.17e-01 | 71.0% | 64.4% |
| 3479682 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.52 | 44.0 | 3.86e-01 | 94.4% | 78.8% |