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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00075
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-37
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hpuA02 | 3.30.70.2050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.85 | 74.0 | 6.12e-01 | 100.0% | 66.7% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.79 | 59.0 | 3.79e-01 | 82.9% | 17.2% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.71 | 54.0 | 4.84e-01 | 94.3% | 61.4% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.70 | 56.0 | 3.37e-01 | 97.1% | 96.2% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.69 | 52.0 | 4.76e-01 | 91.4% | 98.1% |
| 3v33B00 | 3.40.50.11980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 56.0 | 3.66e-01 | 100.0% | 78.8% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.65 | 51.0 | 3.16e-01 | 88.6% | 24.6% |
| 6zepA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.64 | 48.0 | 2.83e-01 | 100.0% | 9.9% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.64 | 50.0 | 4.13e-01 | 88.6% | 100.0% |
| 4l9mA02 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.61 | 45.0 | 2.77e-01 | 85.7% | 70.9% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 42.0 | 3.46e-01 | 80.0% | 45.7% |
| 2ac4A02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 3.11e-01 | 88.6% | 57.7% |
| 3wajA03 | 1.20.58.1650 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 3.51e-01 | 100.0% | 68.0% |
| 2w42B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 45.0 | 3.09e-01 | 88.6% | 98.1% |
| 1zr6A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.59 | 45.0 | 3.17e-01 | 94.3% | 44.0% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 45.0 | 3.65e-01 | 100.0% | 84.3% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 39.0 | 3.22e-01 | 97.1% | 39.8% |
| 4lniJ01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.56 | 43.0 | 3.27e-01 | 100.0% | 51.0% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.56 | 42.0 | 2.99e-01 | 88.6% | 69.5% |
| 3h8hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 40.0 | 3.20e-01 | 94.3% | 41.3% |
| 4wz2C00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 40.0 | 3.33e-01 | 97.1% | 62.2% |
| 6xmtA02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.51 | 37.0 | 2.53e-01 | 94.3% | 80.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962393 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.85 | 74.0 | 6.86e-01 | 100.0% | 91.1% |
| 4031792 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.75 | 61.0 | 3.76e-01 | 100.0% | 20.0% |
| 3847628 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.74 | 62.0 | 4.62e-01 | 100.0% | 46.3% |
| 4196780 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 46.0 | 4.68e-01 | 85.7% | 100.0% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.61 | 48.0 | 4.44e-01 | 97.1% | 66.0% |
| 4156870 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.59 | 47.0 | 3.59e-01 | 97.1% | 70.5% |
| 3967223 | 207.9.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide | 0.57 | 43.0 | 2.92e-01 | 88.6% | 22.6% |