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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00100
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00100
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-131
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 67.0 | 7.11e-01 | 98.0% | 97.8% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 68.0 | 7.16e-01 | 96.0% | 98.9% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 67.0 | 6.53e-01 | 97.0% | 87.2% |
| 6evgA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 45.0 | 3.96e-01 | 77.2% | 72.6% |
| 2p0lA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.43e-01 | 85.1% | 62.0% |
| 2c8mB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 45.0 | 3.45e-01 | 85.1% | 66.1% |
| 5t8uB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 45.0 | 3.39e-01 | 85.1% | 62.7% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 3.20e-01 | 88.1% | 61.3% |
| 2z4tA01 | 2.60.40.3010 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 33.0 | 3.47e-01 | 89.1% | 70.7% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.43e-01 | 91.1% | 76.5% |
| 1lm0A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 40.0 | 4.07e-01 | 86.1% | 96.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.81 | 68.0 | 7.13e-01 | 96.0% | 97.8% |
| 4063416 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.65 | 46.0 | 4.18e-01 | 72.3% | 73.8% |
| 4929501 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.62 | 46.0 | 4.55e-01 | 79.2% | 74.3% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.55 | 43.0 | 4.13e-01 | 82.2% | 93.0% |
| 4456886 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.55 | 44.0 | 3.48e-01 | 86.1% | 76.7% |
| 3591227 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.55 | 46.0 | 3.49e-01 | 94.1% | 82.2% |
| 3386233 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.54 | 43.0 | 3.62e-01 | 86.1% | 74.3% |
| 4588501 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.53 | 42.0 | 3.32e-01 | 86.1% | 73.8% |
| 3462303 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 42.0 | 3.32e-01 | 85.1% | 49.3% |
| 3646748 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 41.0 | 3.93e-01 | 85.1% | 75.8% |
| 3605283 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.51 | 42.0 | 3.25e-01 | 93.1% | 84.4% |
| 3353150 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.50 | 41.0 | 4.22e-01 | 85.1% | 93.6% |