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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00142
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00142
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.88 | 66.0 | 6.18e-01 | 77.8% | 70.9% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.87 | 63.0 | 6.99e-01 | 75.0% | 93.1% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 64.0 | 7.03e-01 | 77.8% | 95.0% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 61.0 | 6.04e-01 | 75.0% | 71.6% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 59.0 | 5.72e-01 | 72.2% | 70.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 54.0 | 5.85e-01 | 77.8% | 75.8% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.85 | 60.0 | 4.58e-01 | 73.6% | 34.9% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 63.0 | 6.01e-01 | 77.8% | 85.2% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 62.0 | 6.63e-01 | 77.8% | 95.3% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.84 | 62.0 | 5.31e-01 | 77.8% | 59.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 60.0 | 6.57e-01 | 75.0% | 100.0% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 66.0 | 5.60e-01 | 83.3% | 87.2% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 59.0 | 5.89e-01 | 75.0% | 87.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.81 | 61.0 | 5.10e-01 | 79.2% | 50.0% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.80 | 67.0 | 4.54e-01 | 90.3% | 32.1% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.80 | 58.0 | 6.26e-01 | 76.4% | 93.4% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 61.0 | 5.43e-01 | 81.9% | 77.5% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 57.0 | 5.76e-01 | 75.0% | 91.5% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 56.0 | 5.44e-01 | 76.4% | 67.9% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.78 | 57.0 | 4.53e-01 | 77.8% | 43.4% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.77 | 69.0 | 5.96e-01 | 95.8% | 91.5% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.76 | 56.0 | 6.17e-01 | 77.8% | 98.3% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 58.0 | 4.65e-01 | 80.6% | 61.2% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.76 | 55.0 | 4.52e-01 | 77.8% | 63.2% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.75 | 51.0 | 4.51e-01 | 70.8% | 48.6% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.75 | 51.0 | 4.90e-01 | 75.0% | 63.0% |
| 4r78A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.74 | 60.0 | 4.35e-01 | 87.5% | 82.2% |
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 60.0 | 6.00e-01 | 87.5% | 85.1% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.73 | 53.0 | 4.60e-01 | 76.4% | 50.5% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 66.0 | 5.56e-01 | 97.2% | 93.9% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.72 | 65.0 | 5.60e-01 | 95.8% | 86.0% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.72 | 51.0 | 4.25e-01 | 73.6% | 78.9% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 62.0 | 6.01e-01 | 95.8% | 82.7% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 52.0 | 4.02e-01 | 77.8% | 34.5% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 52.0 | 5.10e-01 | 79.2% | 71.6% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 54.0 | 5.82e-01 | 97.2% | 98.3% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.71 | 52.0 | 4.38e-01 | 79.2% | 83.3% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.71 | 63.0 | 3.93e-01 | 98.6% | 88.7% |
| 4fz4A00 | 1.20.140.130 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.71 | 59.0 | 4.61e-01 | 91.7% | 74.0% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 51.0 | 4.43e-01 | 76.4% | 50.5% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.70 | 63.0 | 5.37e-01 | 98.6% | 61.9% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 61.0 | 5.96e-01 | 94.4% | 97.5% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.68 | 54.0 | 4.68e-01 | 88.9% | 67.2% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 58.0 | 5.66e-01 | 95.8% | 87.2% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 47.0 | 4.12e-01 | 75.0% | 52.3% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 46.0 | 3.00e-01 | 72.2% | 33.8% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 50.0 | 4.88e-01 | 90.3% | 86.7% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.61 | 52.0 | 4.37e-01 | 95.8% | 75.2% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 53.0 | 4.58e-01 | 100.0% | 95.7% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 43.0 | 4.35e-01 | 95.8% | 77.0% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 50.0 | 3.99e-01 | 93.1% | 97.9% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 47.0 | 4.57e-01 | 95.8% | 82.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.93 | 67.0 | 6.47e-01 | 75.0% | 70.0% |
| 3187917 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.91 | 67.0 | 4.93e-01 | 76.4% | 40.6% |
| 3435612 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.91 | 68.0 | 5.01e-01 | 77.8% | 34.5% |
| 4947371 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.91 | 68.0 | 5.57e-01 | 77.8% | 47.5% |
| 5051746 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.90 | 68.0 | 6.54e-01 | 77.8% | 70.0% |
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.90 | 67.0 | 6.05e-01 | 77.8% | 60.0% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.90 | 68.0 | 6.40e-01 | 79.2% | 68.2% |
| 4316383 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 66.0 | 5.92e-01 | 77.8% | 63.2% |
| 5010596 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 66.0 | 4.50e-01 | 77.8% | 64.1% |
| 3609437 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.88 | 66.0 | 5.17e-01 | 77.8% | 47.4% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.87 | 70.0 | 5.73e-01 | 83.3% | 74.8% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.87 | 66.0 | 6.53e-01 | 79.2% | 80.0% |
| 3241030 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.86 | 65.0 | 4.13e-01 | 79.2% | 18.4% |
| 3275446 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.85 | 65.0 | 5.19e-01 | 79.2% | 43.8% |
| 4996292 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.85 | 69.0 | 6.03e-01 | 95.8% | 61.0% |
| 4028291 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.84 | 66.0 | 3.95e-01 | 80.6% | 27.4% |
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.84 | 62.0 | 3.82e-01 | 76.4% | 16.2% |
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.84 | 62.0 | 6.01e-01 | 77.8% | 80.0% |
| 3522868 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.84 | 63.0 | 5.31e-01 | 79.2% | 49.6% |
| 3550353 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.84 | 62.0 | 6.59e-01 | 77.8% | 89.2% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.83 | 74.0 | 4.59e-01 | 94.4% | 100.0% |
| 5065070 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.83 | 67.0 | 7.04e-01 | 90.3% | 92.3% |
| 3655782 | 101.1.2.598 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD | 0.82 | 73.0 | 4.65e-01 | 94.4% | 99.7% |
| 4941676 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 59.0 | 4.34e-01 | 75.0% | 43.4% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.81 | 65.0 | 6.84e-01 | 95.8% | 92.3% |
| 3215515 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.81 | 66.0 | 6.11e-01 | 87.5% | 75.6% |
| 5063260 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.79 | 70.0 | 6.00e-01 | 95.8% | 90.0% |
| 3608528 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.79 | 67.0 | 5.02e-01 | 94.4% | 41.3% |
| 3715476 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.78 | 71.0 | 5.37e-01 | 95.8% | 72.0% |
| 3584009 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.74 | 60.0 | 4.14e-01 | 88.9% | 33.5% |
| 3430567 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 49.0 | 5.31e-01 | 75.0% | 83.3% |
| 3504347 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 68.0 | 6.11e-01 | 100.0% | 89.5% |
| 3660496 | 604.3.1.19 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF3475 | 0.72 | 65.0 | 4.49e-01 | 98.6% | 80.9% |
| 5033276 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.69 | 60.0 | 4.70e-01 | 95.8% | 81.5% |
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.69 | 63.0 | 5.80e-01 | 100.0% | 80.0% |