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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00147

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00147

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 57.0 6.05e-01 88.5% 90.6%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.74e-01 93.4% 89.8%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 5.61e-01 90.2% 82.1%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 48.0 5.50e-01 90.2% 93.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.54e-01 100.0% 77.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.66e-01 100.0% 81.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 4.83e-01 95.1% 58.7%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 51.0 5.23e-01 90.2% 76.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 5.72e-01 90.2% 79.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 56.0 5.45e-01 88.5% 76.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.12e-01 95.1% 73.4%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.19e-01 90.2% 66.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 56.0 5.66e-01 88.5% 86.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 55.0 5.77e-01 86.9% 92.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 55.0 5.61e-01 100.0% 88.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.74e-01 88.5% 91.5%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.68e-01 86.9% 93.1%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.71e-01 100.0% 90.5%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 59.0 5.50e-01 98.4% 84.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.27e-01 88.5% 80.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.22e-01 90.2% 74.7%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.22e-01 90.2% 78.6%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.66 45.0 5.10e-01 90.2% 100.0%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.50e-01 86.9% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 44.0 3.68e-01 95.1% 38.1%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 5.16e-01 86.9% 92.3%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.93e-01 90.2% 74.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.01e-01 90.2% 81.3%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.81e-01 90.2% 69.7%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.27e-01 88.5% 90.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 5.55e-01 100.0% 90.0%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 49.0 4.90e-01 86.9% 92.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.16e-01 88.5% 87.1%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 53.0 4.63e-01 96.7% 71.1%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 53.0 5.02e-01 98.4% 86.8%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 4.63e-01 96.7% 73.5%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.62 42.0 3.98e-01 96.7% 60.6%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.97e-01 90.2% 88.7%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 34.0 4.05e-01 85.2% 91.2%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.27e-01 90.2% 67.7%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 38.0 4.01e-01 80.3% 70.9%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 43.0 3.66e-01 82.0% 47.6%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 48.0 4.08e-01 95.1% 56.0%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.58e-01 82.0% 58.1%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 44.0 3.66e-01 91.8% 90.8%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 2.85e-01 83.6% 69.0%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 3.08e-01 83.6% 57.6%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.53e-01 95.1% 94.3%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 39.0 2.78e-01 86.9% 44.6%
6j19A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.47e-01 73.8% 95.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 42.0 3.53e-01 98.4% 91.9%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 30.0 2.76e-01 80.3% 43.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.91e-01 91.8% 97.9%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 60.0 5.73e-01 95.1% 61.4%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 60.0 6.57e-01 93.4% 86.0%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 58.0 6.69e-01 93.4% 93.3%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.86 58.0 6.17e-01 95.1% 78.2%
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.86 63.0 5.67e-01 95.1% 58.7%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 58.0 5.69e-01 95.1% 66.2%
3264809 4.1.1.251 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.84 63.0 6.60e-01 98.4% 87.3%
3820064 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.83 62.0 5.59e-01 95.1% 60.0%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.80 66.0 6.25e-01 100.0% 75.3%
3486326 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 63.0 6.67e-01 100.0% 94.5%
5029770 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 58.0 4.83e-01 100.0% 45.7%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.78 51.0 5.77e-01 88.5% 91.1%
3797486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 50.0 4.97e-01 88.5% 63.1%
3231263 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.77 55.0 6.05e-01 91.8% 92.0%
3555931 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.77 63.0 5.08e-01 100.0% 47.0%
3936430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.18e-01 100.0% 60.0%
5039120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 54.0 6.10e-01 83.6% 100.0%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.31e-01 95.1% 67.1%
3507338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.75e-01 100.0% 80.0%
3581143 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 56.0 5.52e-01 95.1% 73.8%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.07e-01 98.4% 89.1%
3819340 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.75 62.0 4.88e-01 98.4% 45.0%
3348456 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.75 63.0 6.34e-01 100.0% 91.7%
3820066 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.42e-01 100.0% 93.3%
1625106 4.1.1.90 beta barrels › SH3 › SH3 › SH3 › DUF4444 0.75 48.0 5.50e-01 90.2% 93.0%
3895018 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.75 62.0 6.06e-01 88.5% 92.3%
4333277 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.75 67.0 5.87e-01 100.0% 74.4%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.13e-01 100.0% 64.0%
3926017 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.75e-01 96.7% 87.3%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 59.0 5.61e-01 100.0% 74.0%
3558774 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.74 61.0 6.19e-01 100.0% 91.7%
3569289 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.73 66.0 6.03e-01 100.0% 83.7%
3296833 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.73 62.0 4.70e-01 100.0% 40.6%
3756676 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.73 65.0 5.53e-01 100.0% 66.0%
3501574 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.73 66.0 6.12e-01 100.0% 90.7%
3750163 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 60.0 5.76e-01 93.4% 78.6%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.72 59.0 4.61e-01 100.0% 42.3%
165657 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 57.0 5.52e-01 88.5% 77.6%
3872095 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 56.0 5.93e-01 88.5% 94.5%
3374228 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 6.06e-01 95.1% 95.0%
3216017 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.10e-01 88.5% 67.8%
4133335 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 55.0 5.55e-01 88.5% 85.0%
3569639 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 56.0 5.08e-01 88.5% 65.0%
3338134 4.1.1.155 beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.70 62.0 5.82e-01 98.4% 89.3%
3259033 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 55.0 5.55e-01 86.9% 85.0%
4951199 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 61.0 5.71e-01 98.4% 85.3%
3539147 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 56.0 5.40e-01 90.2% 75.7%
3566206 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 55.0 5.26e-01 88.5% 74.3%
3882808 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 59.0 5.51e-01 100.0% 76.0%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 6.04e-01 100.0% 87.1%
3899829 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 56.0 5.20e-01 90.2% 70.7%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 60.0 5.91e-01 98.4% 89.2%
3269758 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 55.0 4.98e-01 88.5% 65.0%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 53.0 5.27e-01 86.9% 78.5%
3899851 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 55.0 5.41e-01 90.2% 81.5%
5063688 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 59.0 5.26e-01 98.4% 73.0%
3217112 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 55.0 5.26e-01 90.2% 75.7%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 55.0 5.27e-01 90.2% 75.7%
3526950 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 54.0 5.49e-01 88.5% 86.7%
3398702 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 54.0 5.47e-01 88.5% 86.7%
4957418 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 58.0 5.52e-01 98.4% 86.7%
3503780 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 58.0 5.75e-01 100.0% 89.2%
4989408 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 59.0 5.23e-01 98.4% 71.9%
3625909 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 53.0 4.89e-01 88.5% 65.0%
3737825 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 54.0 5.67e-01 90.2% 96.4%
3234274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 61.0 5.84e-01 100.0% 87.1%
3270547 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 53.0 5.25e-01 88.5% 80.0%
3919980 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 54.0 5.30e-01 90.2% 81.5%
3885696 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 53.0 5.23e-01 88.5% 80.0%
5008254 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.61e-01 98.4% 90.0%
5018743 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.46e-01 98.4% 85.3%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 53.0 5.42e-01 88.5% 89.7%
5020812 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.46e-01 98.4% 86.7%
162441 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 53.0 5.11e-01 90.2% 74.6%
3261986 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 53.0 5.42e-01 90.2% 89.8%
3910605 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 54.0 4.97e-01 88.5% 72.5%
5048137 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.47e-01 98.4% 87.7%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 5.36e-01 98.4% 84.6%
5078178 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 57.0 5.34e-01 98.4% 88.0%
3317929 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 55.0 4.71e-01 100.0% 57.0%
5078626 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 56.0 5.28e-01 98.4% 87.8%
165220 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 53.0 5.05e-01 90.2% 75.3%
4984134 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 55.0 5.25e-01 100.0% 86.7%
3706087 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.07e-01 100.0% 85.0%
3487686 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.97e-01 95.1% 81.2%
353902 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.09e-01 98.4% 84.4%
5041872 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.15e-01 98.4% 85.3%
3554994 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 56.0 4.99e-01 100.0% 69.7%
3575263 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 57.0 5.64e-01 100.0% 93.8%
2834765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 5.43e-01 100.0% 87.0%
3542246 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.12e-01 100.0% 78.7%
3898363 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.28e-01 98.4% 84.3%
524 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 54.0 4.63e-01 96.7% 73.5%