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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00149

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00149

Identity

Kingdom:
phage

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: rep: IMGVR_UViG_3300026279_000442-3300026279-Ga0208411_10025812__D2-95
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xkoB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.62 50.0 4.17e-01 100.0% 50.9%
3h2dB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.62 50.0 4.23e-01 100.0% 52.6%
1xkrA00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.62 51.0 3.99e-01 100.0% 41.5%
4gc8B00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.61 46.0 3.74e-01 100.0% 43.1%
3hzhB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.61 51.0 4.31e-01 100.0% 55.8%
3hm4A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.60 48.0 4.12e-01 100.0% 54.2%
4hynB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.58 48.0 3.77e-01 100.0% 43.1%
3hjlA03 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 22.0 3.05e-01 82.1% 75.6%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.53 37.0 3.45e-01 72.6% 84.0%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 43.0 2.96e-01 92.6% 86.2%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.51 31.0 3.24e-01 72.6% 64.8%
6e6qA00 1.10.10.1100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain 0.51 25.0 2.95e-01 98.9% 67.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002938 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.64 52.0 4.02e-01 100.0% 41.0%
4927772 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.63 51.0 3.99e-01 100.0% 41.7%
4567910 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.63 52.0 4.06e-01 100.0% 42.2%
7308 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.63 48.0 4.15e-01 100.0% 52.0%
4995272 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.63 51.0 3.93e-01 100.0% 41.0%
5020424 866.1.1.0 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like 0.63 53.0 4.06e-01 100.0% 41.4%
3387476 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.62 51.0 4.46e-01 100.0% 59.3%
4964674 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.62 51.0 3.95e-01 100.0% 41.5%
4964675 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.62 49.0 3.85e-01 100.0% 41.0%
4021785 1100.1.1.0 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein 0.62 44.0 3.34e-01 87.4% 30.0%
5013246 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.61 50.0 3.93e-01 100.0% 42.0%
5004490 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.61 49.0 3.79e-01 100.0% 39.0%
138157 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.61 51.0 4.31e-01 100.0% 55.8%
4988735 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.60 49.0 3.88e-01 100.0% 42.2%
5016318 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.60 51.0 3.97e-01 100.0% 43.7%
4938613 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.60 52.0 4.07e-01 100.0% 44.5%
5050255 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.60 54.0 4.14e-01 100.0% 44.8%
135350 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.60 48.0 4.12e-01 100.0% 54.2%
4987424 866.1.1.0 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like 0.59 49.0 3.87e-01 100.0% 43.0%
236079 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.58 48.0 3.75e-01 100.0% 42.1%
None — 0.58 48.0 3.79e-01 100.0% 44.1%
5016319 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.55 49.0 3.80e-01 100.0% 45.5%
4929293 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.54 37.0 3.92e-01 75.8% 80.0%
3676474 295.1.1.28 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF26668 0.52 43.0 3.45e-01 92.6% 94.4%
3320298 4955.1.1.8 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › AtuA_ferredoxin 0.52 37.0 3.43e-01 75.8% 83.9%
None — 0.50 36.0 3.57e-01 75.8% 81.9%