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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00235
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00235
Identity
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.73 | 51.0 | 4.56e-01 | 86.4% | 54.4% |
| 1toaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.67 | 59.0 | 4.44e-01 | 100.0% | 57.3% |
| 3dsqA01 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 42.0 | 4.15e-01 | 84.7% | 62.9% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.62 | 48.0 | 3.47e-01 | 83.1% | 38.6% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 46.0 | 3.70e-01 | 79.7% | 46.4% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 53.0 | 3.61e-01 | 100.0% | 70.4% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.59 | 44.0 | 4.30e-01 | 81.4% | 83.3% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 45.0 | 3.99e-01 | 81.4% | 84.3% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 51.0 | 3.54e-01 | 96.6% | 86.4% |
| 2vqmA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.56 | 48.0 | 2.97e-01 | 98.3% | 46.5% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.56 | 46.0 | 4.04e-01 | 93.2% | 81.3% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 48.0 | 3.19e-01 | 100.0% | 42.9% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 48.0 | 3.56e-01 | 98.3% | 69.7% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 44.0 | 2.94e-01 | 86.4% | 28.1% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 48.0 | 3.55e-01 | 100.0% | 70.3% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 47.0 | 3.49e-01 | 98.3% | 66.7% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 48.0 | 3.60e-01 | 100.0% | 73.2% |
| 1egdA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 47.0 | 3.59e-01 | 98.3% | 75.9% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 41.0 | 3.96e-01 | 89.8% | 89.9% |
| 2or0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 46.0 | 3.31e-01 | 100.0% | 44.6% |
| 2v4jC01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.52 | 29.0 | 3.28e-01 | 94.9% | 69.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581397 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.69 | 50.0 | 4.34e-01 | 79.7% | 51.0% |
| 5061358 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.68 | 58.0 | 4.75e-01 | 96.6% | 88.2% |
| 5037907 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.68 | 53.0 | 4.61e-01 | 94.9% | 55.6% |
| 3201554 | 150.1.1.98 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint | 0.67 | 45.0 | 3.58e-01 | 83.1% | 34.2% |
| 3280946 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.67 | 48.0 | 3.98e-01 | 78.0% | 48.2% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.67 | 48.0 | 3.62e-01 | 76.3% | 60.7% |
| 5055185 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.66 | 48.0 | 4.80e-01 | 79.7% | 86.7% |
| 3619159 | 292.2.1.5 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 | 0.64 | 50.0 | 4.22e-01 | 83.1% | 66.3% |
| 4933197 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.64 | 53.0 | 4.52e-01 | 100.0% | 56.8% |
| 4981954 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.64 | 52.0 | 4.64e-01 | 98.3% | 62.4% |
| 3318660 | 874.1.1.1 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge | 0.63 | 47.0 | 3.14e-01 | 79.7% | 94.3% |
| 4086080 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.63 | 52.0 | 3.85e-01 | 91.5% | 91.0% |
| 4683333 | 138.1.1.5 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 | 0.63 | 45.0 | 3.53e-01 | 74.6% | 45.0% |
| 4947103 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.63 | 51.0 | 4.46e-01 | 100.0% | 58.9% |
| 3212246 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 48.0 | 3.41e-01 | 81.4% | 76.6% |
| 3924535 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.63 | 54.0 | 3.40e-01 | 96.6% | 19.4% |
| 3735837 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 45.0 | 3.80e-01 | 79.7% | 49.5% |
| 3925084 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.62 | 43.0 | 3.47e-01 | 98.3% | 39.1% |
| 4036022 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.61 | 53.0 | 3.37e-01 | 96.6% | 22.4% |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 51.0 | 3.27e-01 | 93.2% | 42.0% |
| 3939109 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 52.0 | 3.36e-01 | 100.0% | 52.9% |
| 5062914 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.61 | 51.0 | 4.47e-01 | 100.0% | 62.2% |
| 3643141 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.60 | 41.0 | 3.73e-01 | 93.2% | 52.5% |
| 3208110 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 41.0 | 3.45e-01 | 76.3% | 40.9% |
| 3593162 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 46.0 | 2.73e-01 | 81.4% | 59.9% |
| 3277618 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 46.0 | 4.27e-01 | 84.7% | 66.7% |
| 5057460 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.59 | 50.0 | 4.35e-01 | 100.0% | 62.2% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.59 | 49.0 | 3.12e-01 | 91.5% | 19.7% |
| 3614888 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 44.0 | 3.69e-01 | 83.1% | 46.7% |
| 5030202 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.58 | 48.0 | 4.28e-01 | 100.0% | 62.2% |
| 3839021 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.57 | 39.0 | 3.42e-01 | 72.9% | 45.3% |
| 4630306 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.55 | 44.0 | 2.76e-01 | 100.0% | 14.2% |
| 3411459 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 42.0 | 3.89e-01 | 81.4% | 80.0% |
| 3494350 | 631.1.1.1 ↗ | alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP | 0.55 | 47.0 | 3.11e-01 | 100.0% | 28.9% |
| 4019393 | 109.4.1.1393 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 | 0.54 | 47.0 | 3.11e-01 | 98.3% | 29.6% |
| 3256528 | 4156.1.1.1 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 | 0.53 | 46.0 | 3.55e-01 | 100.0% | 87.1% |
| 3597216 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 2.90e-01 | 100.0% | 79.4% |
| 4615407 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.53 | 45.0 | 2.83e-01 | 100.0% | 69.6% |
| 3787982 | 109.4.1.2372 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28949 | 0.52 | 46.0 | 2.95e-01 | 98.3% | 55.6% |