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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00243
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.77 | 57.0 | 4.92e-01 | 78.5% | 52.1% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 55.0 | 4.70e-01 | 78.5% | 76.0% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 51.0 | 4.64e-01 | 89.9% | 57.3% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 51.0 | 4.93e-01 | 100.0% | 67.0% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 51.0 | 4.96e-01 | 77.2% | 70.5% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 50.0 | 4.26e-01 | 88.6% | 48.4% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 49.0 | 4.95e-01 | 79.7% | 77.2% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 46.0 | 4.09e-01 | 77.2% | 49.6% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 47.0 | 3.69e-01 | 74.7% | 92.0% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 47.0 | 4.46e-01 | 77.2% | 63.5% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.64 | 54.0 | 5.33e-01 | 93.7% | 96.4% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 56.0 | 4.71e-01 | 97.5% | 77.6% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.64 | 49.0 | 3.99e-01 | 81.0% | 56.0% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.63 | 45.0 | 3.91e-01 | 73.4% | 58.1% |
| 3d85C00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.63 | 45.0 | 3.77e-01 | 74.7% | 61.7% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.63 | 42.0 | 2.87e-01 | 72.2% | 20.9% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.62 | 54.0 | 3.94e-01 | 98.7% | 75.3% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 53.0 | 5.30e-01 | 98.7% | 98.8% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 53.0 | 4.48e-01 | 100.0% | 71.1% |
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 44.0 | 4.58e-01 | 98.7% | 82.4% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 42.0 | 3.75e-01 | 88.6% | 51.7% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 43.0 | 3.93e-01 | 77.2% | 57.5% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 44.0 | 4.84e-01 | 87.3% | 100.0% |
| 3lnrA00 | 1.20.120.1530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 47.0 | 3.77e-01 | 88.6% | 46.9% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.57 | 50.0 | 3.68e-01 | 98.7% | 44.9% |
| 3lszA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 41.0 | 3.56e-01 | 87.3% | 50.4% |
| 3vkgA18 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.51 | 45.0 | 3.53e-01 | 100.0% | 69.9% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 35.0 | 3.09e-01 | 70.9% | 59.5% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014788 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 55.0 | 5.03e-01 | 78.5% | 60.6% |
| 3726210 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.73 | 55.0 | 4.17e-01 | 79.7% | 39.4% |
| 3538928 | 4.1.1.358 ↗ | beta barrels › SH3 › SH3 › SH3 › PLU-1 | 0.70 | 50.0 | 4.07e-01 | 89.9% | 41.4% |
| 3820491 | 601.30.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 | 0.70 | 63.0 | 5.47e-01 | 100.0% | 77.5% |
| 3186359 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 63.0 | 4.78e-01 | 100.0% | 48.9% |
| 2492249 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.69 | 51.0 | 4.29e-01 | 89.9% | 47.0% |
| 5061636 | 150.1.1.205 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Trp_dioxygenase | 0.69 | 59.0 | 5.78e-01 | 97.5% | 86.9% |
| 4101536 | 7023.1.1.3 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 | 0.68 | 53.0 | 3.95e-01 | 100.0% | 34.2% |
| 1885522 | 3834.1.1.1 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA_TcB_BD | 0.68 | 50.0 | 3.27e-01 | 78.5% | 51.0% |
| 1927453 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.68 | 50.0 | 5.45e-01 | 78.5% | 100.0% |
| 3427778 | 604.1.1.144 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26575 | 0.67 | 47.0 | 4.68e-01 | 86.1% | 71.2% |
| 3913790 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.67 | 56.0 | 4.96e-01 | 100.0% | 62.6% |
| 4021747 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.66 | 55.0 | 4.48e-01 | 100.0% | 49.0% |
| 4976893 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.66 | 46.0 | 4.06e-01 | 91.1% | 51.8% |
| 3843567 | 3554.1.1.4 ↗ | a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › TF_AP-2 | 0.66 | 47.0 | 4.07e-01 | 74.7% | 66.7% |
| 3721468 | 604.7.1.5 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › RMP1 | 0.65 | 57.0 | 4.95e-01 | 98.7% | 64.8% |
| 3195851 | 601.1.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 | 0.65 | 58.0 | 4.52e-01 | 98.7% | 87.6% |
| 3785454 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.65 | 56.0 | 5.15e-01 | 96.2% | 82.9% |
| 4184330 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.64 | 53.0 | 4.92e-01 | 91.1% | 84.0% |
| 4000187 | 5069.1.3.66 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › 7TM_GPCR_Srw | 0.64 | 56.0 | 4.87e-01 | 98.7% | 65.9% |
| 3526270 | 5054.1.1.9 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel | 0.64 | 52.0 | 3.56e-01 | 91.1% | 27.0% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.64 | 52.0 | 4.75e-01 | 88.6% | 70.5% |
| 3783794 | 192.15.1.77 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 | 0.62 | 56.0 | 4.82e-01 | 100.0% | 80.8% |
| 3431118 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 54.0 | 4.88e-01 | 100.0% | 70.9% |
| 3358694 | 192.29.1.101 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Rx_N | 0.62 | 52.0 | 4.60e-01 | 94.9% | 66.7% |
| 3225544 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.62 | 51.0 | 4.80e-01 | 93.7% | 80.0% |
| 4944186 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.61 | 43.0 | 3.89e-01 | 73.4% | 75.2% |
| 3684830 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.60 | 49.0 | 4.57e-01 | 89.9% | 79.0% |
| 3742731 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.60 | 51.0 | 4.12e-01 | 94.9% | 98.7% |
| 3931883 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.60 | 51.0 | 4.60e-01 | 94.9% | 73.6% |
| 3613495 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.60 | 39.0 | 3.97e-01 | 100.0% | 66.3% |
| 3620115 | 109.4.1.598 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mak10 | 0.60 | 52.0 | 3.59e-01 | 98.7% | 36.4% |
| 4097040 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.60 | 49.0 | 4.58e-01 | 91.1% | 81.0% |
| 3483015 | 192.29.1.140 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Frag1 | 0.60 | 50.0 | 4.60e-01 | 93.7% | 75.2% |
| 3774822 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.60 | 50.0 | 4.09e-01 | 89.9% | 55.0% |
| 3404174 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.59 | 50.0 | 4.57e-01 | 93.7% | 74.3% |
| 3864818 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.59 | 49.0 | 3.49e-01 | 89.9% | 33.5% |
| 4978734 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.59 | 50.0 | 3.92e-01 | 98.7% | 43.5% |
| 3663674 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 50.0 | 3.93e-01 | 93.7% | 44.8% |
| 4634395 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.58 | 48.0 | 4.45e-01 | 94.9% | 84.8% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.58 | 46.0 | 3.72e-01 | 89.9% | 55.8% |
| 4293733 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.57 | 47.0 | 4.32e-01 | 93.7% | 84.8% |
| 3913373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 49.0 | 4.29e-01 | 97.5% | 63.3% |
| 3459730 | 601.3.1.13 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › TMEM33_Pom33 | 0.56 | 49.0 | 3.57e-01 | 98.7% | 36.6% |
| 3819233 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.56 | 47.0 | 4.19e-01 | 94.9% | 76.5% |
| 3483603 | 7023.1.1.1 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT | 0.55 | 47.0 | 3.83e-01 | 100.0% | 49.0% |
| 3172070 | 109.4.1.3163 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29832, PF29835 | 0.55 | 50.0 | 3.06e-01 | 100.0% | 32.5% |
| 5018039 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 48.0 | 4.24e-01 | 97.5% | 74.8% |
| 3623381 | 5069.1.3.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Mpv17_PMP22 | 0.53 | 45.0 | 4.26e-01 | 100.0% | 83.0% |