←Back to structures
LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00267
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00267
Identity
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-153
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00453__D4-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01467.33 best | CTP_transf_like | 36.6 | 7.10e-09 | 80.6% | 69.9% |
D2
high
residues 159-211
Domain cluster:
rep: BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00074__D149-197
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.64 | 48.0 | 4.81e-01 | 83.0% | 81.5% |
| 1wy5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.64 | 51.0 | 4.43e-01 | 98.1% | 70.2% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 44.0 | 3.60e-01 | 73.6% | 58.4% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.60 | 42.0 | 3.29e-01 | 75.5% | 100.0% |
| 3dv9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 45.0 | 4.19e-01 | 84.9% | 82.9% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 43.0 | 3.91e-01 | 81.1% | 88.0% |
| 1n00A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.56 | 45.0 | 3.95e-01 | 90.6% | 82.1% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.56 | 37.0 | 4.16e-01 | 73.6% | 100.0% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.55 | 41.0 | 3.71e-01 | 83.0% | 66.7% |
| 4eekA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 41.0 | 3.89e-01 | 84.9% | 72.7% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 3.14e-01 | 98.1% | 60.9% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.20e-01 | 98.1% | 60.8% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 43.0 | 3.59e-01 | 100.0% | 79.5% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.54 | 39.0 | 2.75e-01 | 79.2% | 33.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4257552 | 3018.1.1.2 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS-like | 0.65 | 53.0 | 4.77e-01 | 98.1% | 85.0% |
| 3899151 | 3450.1.1.1 ↗ | alpha arrays › Myosin-binding motif (m-domain) C-terminal subdomain › Myosin-binding motif (m-domain) C-terminal subdomain › Myosin-binding motif (m-domain) C-terminal subdomain › THB | 0.63 | 45.0 | 4.66e-01 | 83.0% | 92.0% |
| 4029637 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.63 | 47.0 | 2.90e-01 | 86.8% | 25.9% |
| 3783338 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 43.0 | 4.53e-01 | 81.1% | 91.1% |
| 3316738 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.60 | 49.0 | 3.09e-01 | 98.1% | 62.7% |
| 4027771 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.60 | 44.0 | 3.08e-01 | 84.9% | 81.0% |
| 3445897 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 47.0 | 4.54e-01 | 96.2% | 92.3% |
| 3386943 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.59 | 47.0 | 3.81e-01 | 96.2% | 68.3% |
| 4406945 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.58 | 40.0 | 3.23e-01 | 75.5% | 81.7% |
| 3401754 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.58 | 42.0 | 3.59e-01 | 81.1% | 71.6% |
| 3368926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 44.0 | 4.20e-01 | 90.6% | 89.2% |
| 3335868 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.56 | 42.0 | 3.53e-01 | 83.0% | 75.8% |
| 3324063 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 41.0 | 2.84e-01 | 98.1% | 28.3% |
| 5062758 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 2.74e-01 | 84.9% | 39.4% |
D3
high
residues 262-427