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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00297
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00297
Identity
- Kingdom:
- phage
Quality
78.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-114
Domain cluster:
rep: IMGVR_UViG_3300028196_001314-3300028196-Ga0257114_10067682__D9-83
D2
high
residues 352-425
Domain cluster:
representative
CATH (2)
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4616082 | 4236.1.1.0 ↗ | few secondary structure elements › Sec-C motif › Sec-C motif › Sec-C motif | 0.73 | 37.0 | 4.73e-01 | 78.4% | 90.0% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.63 | 38.0 | 4.50e-01 | 81.1% | 90.0% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.59 | 36.0 | 4.16e-01 | 79.7% | 90.0% |
| 3877714 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.57 | 45.0 | 4.46e-01 | 85.1% | 91.3% |
| 3394297 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.57 | 46.0 | 3.75e-01 | 87.8% | 50.4% |
| 3843603 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.56 | 32.0 | 2.47e-01 | 87.8% | 22.9% |
| 2856952 | 379.1.1.6 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › C6_KAZAL | 0.56 | 42.0 | 4.13e-01 | 83.8% | 74.1% |
| 5023508 | 275.1.1.5 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC | 0.54 | 40.0 | 3.86e-01 | 79.7% | 94.1% |
| 3592769 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.53 | 47.0 | 2.95e-01 | 100.0% | 55.9% |
| 3362593 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.53 | 44.0 | 3.78e-01 | 89.2% | 95.6% |
| 3657989 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.52 | 45.0 | 2.91e-01 | 100.0% | 62.1% |
| 3833034 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.52 | 45.0 | 2.81e-01 | 100.0% | 53.4% |
D3
medium
residues 130-218
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 32.0 | 2.77e-01 | 77.5% | 32.1% |
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 26.0 | 3.21e-01 | 71.9% | 70.4% |
| 4pk9A00 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.52 | 36.0 | 2.49e-01 | 73.0% | 49.9% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.26e-01 | 71.9% | 65.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3939849 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.54 | 34.0 | 2.89e-01 | 82.0% | 36.1% |
| 3833034 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.52 | 42.0 | 2.76e-01 | 92.1% | 49.0% |
| 3316151 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 38.0 | 2.74e-01 | 78.7% | 69.0% |