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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00308

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00308

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-61
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.60 40.0 3.12e-01 70.8% 53.2%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 41.0 2.72e-01 93.8% 17.5%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 41.0 3.27e-01 85.4% 37.3%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 38.0 3.45e-01 75.0% 61.2%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.52 43.0 3.46e-01 95.8% 51.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038092 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 43.0 3.68e-01 93.8% 43.5%
3661674 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 48.0 3.67e-01 100.0% 74.3%
4501109 7573.1.1.9 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran, Pribosyl_synth 0.60 41.0 2.87e-01 70.8% 58.1%
5068124 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.60 40.0 3.08e-01 70.8% 28.3%
2514721 172.1.1.1 alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase › Citrate_synt 0.51 35.0 2.73e-01 72.9% 43.3%