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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00322
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00322
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-121
Domain cluster:
rep: JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00043__D4-101
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 34.0 | 4.12e-01 | 100.0% | 68.4% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 35.0 | 3.80e-01 | 100.0% | 61.2% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.62 | 52.0 | 4.55e-01 | 90.7% | 68.2% |
| 1w1oA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.59 | 40.0 | 3.26e-01 | 100.0% | 35.5% |
| 3c12A02 | 2.60.40.4070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 39.0 | 4.43e-01 | 77.1% | 93.1% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.57 | 42.0 | 3.35e-01 | 76.3% | 86.3% |
| 4es8B02 | 2.60.40.3580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 4.24e-01 | 76.3% | 85.1% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.56 | 34.0 | 4.07e-01 | 93.2% | 95.9% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.46e-01 | 71.2% | 65.4% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 33.0 | 3.80e-01 | 73.7% | 86.7% |
| 3gf8A01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.33e-01 | 80.5% | 53.2% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.53 | 32.0 | 3.75e-01 | 100.0% | 83.9% |
| 3payC01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.39e-01 | 80.5% | 51.7% |
| 5nfiB01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.51e-01 | 81.4% | 62.0% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.39e-01 | 74.6% | 79.5% |
| 2mf9A00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 36.0 | 3.27e-01 | 71.2% | 71.3% |
| 1c9fA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 33.0 | 3.68e-01 | 99.2% | 87.4% |
| 6u7jA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.64e-01 | 70.3% | 84.3% |
| 1rlhA02 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.50 | 33.0 | 3.59e-01 | 100.0% | 79.2% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.53e-01 | 72.9% | 81.5% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.89 | 55.0 | 6.68e-01 | 84.7% | 92.5% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.85 | 55.0 | 6.43e-01 | 78.8% | 90.6% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.81 | 53.0 | 6.22e-01 | 81.4% | 92.9% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.81 | 53.0 | 6.12e-01 | 79.7% | 91.8% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.80 | 54.0 | 6.17e-01 | 81.4% | 91.1% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 53.0 | 6.04e-01 | 79.7% | 88.9% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 54.0 | 6.16e-01 | 81.4% | 91.1% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.80 | 55.0 | 6.06e-01 | 82.2% | 87.4% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.80 | 47.0 | 6.00e-01 | 80.5% | 100.0% |
| 4980287 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.79 | 48.0 | 5.55e-01 | 82.2% | 83.5% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.79 | 49.0 | 5.64e-01 | 80.5% | 84.1% |
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.78 | 53.0 | 5.90e-01 | 82.2% | 86.3% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.78 | 54.0 | 5.41e-01 | 82.2% | 69.7% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.78 | 53.0 | 5.64e-01 | 82.2% | 78.1% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.77 | 53.0 | 6.01e-01 | 82.2% | 93.3% |
| 4026479 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.76 | 69.0 | 6.71e-01 | 100.0% | 88.5% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.74 | 56.0 | 6.05e-01 | 83.1% | 93.0% |
| 5076894 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 67.0 | 5.87e-01 | 100.0% | 69.4% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 52.0 | 5.77e-01 | 84.7% | 92.6% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.72 | 54.0 | 5.52e-01 | 78.8% | 86.1% |
| 3419007 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.70 | 55.0 | 5.59e-01 | 89.0% | 84.3% |
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 60.0 | 5.82e-01 | 100.0% | 89.2% |
| 403748 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.64 | 53.0 | 4.65e-01 | 88.1% | 63.5% |
| 3535810 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.64 | 52.0 | 5.36e-01 | 88.1% | 91.8% |
| 4971468 | 329.1.1.0 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain | 0.63 | 38.0 | 3.62e-01 | 100.0% | 51.9% |
| 3236803 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.61 | 39.0 | 4.10e-01 | 73.7% | 72.4% |
| 4929726 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 38.0 | 4.08e-01 | 75.4% | 72.4% |
| 5011941 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.60 | 36.0 | 2.82e-01 | 100.0% | 28.4% |
| 3593926 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.58 | 41.0 | 3.16e-01 | 100.0% | 30.0% |
| 3713162 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.58 | 41.0 | 3.05e-01 | 100.0% | 28.7% |
| 5020151 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.57 | 34.0 | 3.26e-01 | 84.7% | 50.4% |
| 4179073 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.56 | 38.0 | 3.71e-01 | 100.0% | 61.5% |
| 5060238 | 11.1.1.533 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR | 0.56 | 36.0 | 4.09e-01 | 76.3% | 85.6% |
| 4565793 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.55 | 39.0 | 3.82e-01 | 100.0% | 67.2% |
| 4168679 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.55 | 38.0 | 3.71e-01 | 100.0% | 64.6% |
| 3582019 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 33.0 | 3.64e-01 | 73.7% | 73.7% |
| 3531179 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 34.0 | 3.92e-01 | 75.4% | 85.9% |
| 4955812 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.54 | 36.0 | 3.75e-01 | 100.0% | 72.7% |
| 5083851 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 39.0 | 4.00e-01 | 76.3% | 77.2% |
| 4941003 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.54 | 37.0 | 3.85e-01 | 100.0% | 75.5% |
| 3996048 | 11.1.1.161 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII | 0.54 | 40.0 | 4.05e-01 | 82.2% | 76.7% |
| 5055012 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.94e-01 | 72.0% | 83.0% |
| 5010520 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.53 | 37.0 | 3.88e-01 | 100.0% | 78.2% |
| 4954540 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 35.0 | 3.61e-01 | 89.8% | 70.9% |
| 5080019 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.52 | 35.0 | 3.70e-01 | 100.0% | 77.1% |
| 2647850 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.52 | 33.0 | 3.74e-01 | 73.7% | 83.5% |
| 3735526 | 329.1.1.0 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain | 0.52 | 37.0 | 3.51e-01 | 100.0% | 62.1% |
| 3272524 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 31.0 | 3.12e-01 | 72.0% | 59.2% |
| 4433028 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.50 | 35.0 | 3.30e-01 | 100.0% | 60.0% |
| 4975837 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.81e-01 | 72.9% | 90.0% |