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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00324

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00324

Identity

Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-92
PDB
D2 medium residues 105-310
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.82 70.0 5.09e-01 89.3% 49.7%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.80 63.0 4.35e-01 81.1% 50.7%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.80 69.0 4.79e-01 90.3% 48.2%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.79 71.0 4.88e-01 94.2% 41.8%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.79 67.0 4.82e-01 88.8% 52.7%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.77 65.0 4.75e-01 88.8% 53.8%
3fhhA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 67.0 4.91e-01 93.2% 58.1%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 64.0 4.96e-01 90.8% 54.3%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 64.0 4.85e-01 92.2% 71.5%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.72 62.0 4.57e-01 92.2% 67.3%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.72 61.0 4.35e-01 90.3% 46.7%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.71 64.0 4.43e-01 95.1% 40.7%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 60.0 4.30e-01 90.3% 60.3%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 61.0 4.38e-01 93.2% 63.9%
6wulB01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.67 55.0 4.56e-01 85.0% 84.0%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.67 60.0 4.64e-01 93.2% 57.6%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.66 57.0 4.49e-01 91.3% 63.4%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.66 51.0 4.48e-01 78.6% 92.0%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.66 55.0 4.68e-01 85.9% 76.4%
7vu0A01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.65 58.0 4.49e-01 93.2% 62.3%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.65 54.0 4.27e-01 87.4% 70.1%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.64 55.0 4.48e-01 88.8% 88.3%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.63 51.0 4.15e-01 83.0% 91.0%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.63 50.0 4.33e-01 85.0% 55.6%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.62 54.0 4.48e-01 90.3% 79.5%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 50.0 4.35e-01 83.5% 77.3%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 45.0 4.05e-01 74.8% 72.4%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 53.0 4.11e-01 91.7% 60.6%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 52.0 4.33e-01 92.2% 65.2%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 51.0 4.01e-01 88.3% 61.3%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 50.0 4.02e-01 86.9% 61.2%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 51.0 4.34e-01 90.8% 76.1%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.59 53.0 4.29e-01 95.1% 82.1%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.57 41.0 3.85e-01 73.3% 80.8%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 51.0 4.11e-01 97.1% 73.1%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 50.0 4.17e-01 93.2% 79.4%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.55 45.0 4.23e-01 84.5% 96.0%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 46.0 4.02e-01 87.9% 73.4%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 44.0 3.92e-01 86.9% 65.9%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.54 42.0 3.94e-01 81.1% 73.3%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 44.0 3.99e-01 86.4% 90.0%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 44.0 3.87e-01 86.9% 70.9%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 43.0 3.98e-01 85.0% 81.7%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.52 40.0 3.85e-01 85.0% 69.0%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 36.0 4.15e-01 79.1% 100.0%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.51 39.0 4.09e-01 85.9% 86.4%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3100974 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.87 64.0 6.41e-01 74.8% 100.0%
3839880 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.82 75.0 5.21e-01 95.1% 52.9%
3948186 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.82 76.0 5.32e-01 97.1% 48.0%
4440914 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.81 74.0 4.97e-01 94.2% 50.3%
4870099 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.80 74.0 5.27e-01 97.6% 56.2%
1883909 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.79 70.0 4.78e-01 92.7% 59.3%
1716634 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.79 69.0 5.02e-01 91.7% 49.9%
4180622 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.79 72.0 6.09e-01 96.1% 76.9%
1760440 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.79 70.0 5.16e-01 94.2% 51.9%
2719886 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.77 69.0 4.53e-01 94.7% 57.6%
3965485 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.74 69.0 4.65e-01 96.6% 63.8%
1760802 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.72 60.0 4.51e-01 86.9% 43.9%
4256431 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.71 63.0 4.67e-01 93.7% 65.8%
4358482 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.71 60.0 4.00e-01 88.8% 53.2%
3980013 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.70 59.0 4.56e-01 86.9% 45.5%
2849910 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.69 61.0 4.43e-01 93.2% 39.9%
3973457 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.68 61.0 4.56e-01 93.2% 54.2%
3516401 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.68 48.0 3.90e-01 71.8% 65.6%
4416793 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.66 55.0 4.35e-01 86.9% 51.4%
4591311 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.66 56.0 3.82e-01 91.3% 54.6%
4513489 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.66 55.0 4.52e-01 86.9% 53.0%
3470169 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 55.0 4.30e-01 86.4% 82.4%
3465157 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 54.0 4.41e-01 85.0% 73.1%
3387633 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 54.0 4.60e-01 85.9% 77.2%
3963279 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.65 54.0 4.63e-01 85.4% 77.6%
4098598 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.65 58.0 4.19e-01 93.2% 53.6%
3839133 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.65 59.0 4.66e-01 94.7% 74.9%
4010676 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.65 59.0 4.60e-01 95.1% 52.4%
4038477 5084.3.1.3 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 0.65 52.0 4.43e-01 82.5% 71.7%
4100165 5084.8.1.3 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher_TcfC 0.65 55.0 4.16e-01 88.8% 45.3%
4356082 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 52.0 4.39e-01 83.0% 75.8%
3351533 5084.5.1.23 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.64 52.0 4.48e-01 87.9% 54.9%
3055859 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.64 58.0 3.94e-01 98.1% 56.0%
4027955 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.64 50.0 4.08e-01 80.6% 71.9%
4885978 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.63 52.0 4.43e-01 86.4% 77.9%
3970016 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 53.0 4.27e-01 86.9% 52.8%
3235255 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.63 45.0 3.72e-01 72.3% 67.4%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.63 50.0 4.77e-01 82.5% 75.8%
4318781 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 49.0 4.24e-01 81.1% 75.8%
3644755 5084.5.1.23 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.63 52.0 4.43e-01 89.8% 55.9%
3965061 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 48.0 4.44e-01 79.1% 85.4%
2834683 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.63 52.0 4.18e-01 86.4% 80.9%
4379627 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 50.0 4.36e-01 84.0% 74.2%
3387574 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.62 49.0 4.28e-01 83.0% 74.5%
4679157 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.62 54.0 4.30e-01 90.3% 88.1%
4319395 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.62 49.0 4.10e-01 83.0% 54.6%
4450761 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 50.0 4.18e-01 84.5% 70.6%
3966665 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.61 52.0 4.01e-01 87.9% 57.8%
4162922 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 50.0 4.30e-01 84.0% 73.5%
4191031 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.61 50.0 4.29e-01 84.0% 73.5%
885 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 45.0 4.05e-01 74.8% 72.4%
4150627 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 50.0 4.33e-01 84.5% 76.3%
3838722 5084.3.1.3 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 0.61 49.0 4.23e-01 83.0% 72.3%
4419134 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 47.0 4.17e-01 78.6% 73.1%
3968681 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.61 51.0 3.95e-01 86.9% 57.7%
4069053 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.61 52.0 4.46e-01 90.3% 76.6%
4347483 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 48.0 3.99e-01 83.0% 65.4%
4315977 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.60 52.0 4.75e-01 90.3% 79.2%
890 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.59 51.0 4.32e-01 90.8% 76.4%
3839997 5084.5.4.1 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.59 53.0 4.11e-01 93.7% 71.1%
3969139 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.59 51.0 3.94e-01 92.2% 58.2%
4102065 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.58 48.0 4.34e-01 85.4% 85.8%
2321077 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.58 50.0 4.27e-01 90.3% 75.5%
3164364 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.57 43.0 3.89e-01 78.2% 69.2%
4582939 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.57 50.0 4.28e-01 93.2% 72.8%
3964794 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.57 49.0 4.69e-01 91.3% 90.4%
None 0.57 48.0 4.10e-01 88.8% 64.7%
4377115 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.56 43.0 2.74e-01 80.1% 20.1%
3974137 5084.5.1.69 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › B-barrel_PelB_C 0.55 45.0 3.88e-01 85.9% 74.0%
4009329 5084.5.1.27 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › NfrA_C 0.55 43.0 4.06e-01 81.6% 78.4%
4181051 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.54 48.0 3.59e-01 93.7% 74.9%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.54 40.0 4.49e-01 80.6% 98.1%
3968806 5084.5.1.68 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27733 0.52 38.0 3.82e-01 79.1% 73.6%
4571005 5084.5.1.66 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF2490 0.52 39.0 3.97e-01 77.7% 87.7%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.52 39.0 4.24e-01 95.6% 93.5%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.51 40.0 4.36e-01 94.2% 97.6%
D3 medium residues 398-507
PDB