←Back to structures
LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00355
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00355
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-21_202-263
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 48.0 | 4.73e-01 | 97.4% | 63.7% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 48.0 | 5.50e-01 | 96.1% | 92.9% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 44.0 | 4.62e-01 | 94.8% | 78.6% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 46.0 | 5.08e-01 | 96.1% | 100.0% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 46.0 | 4.62e-01 | 98.7% | 75.0% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 47.0 | 4.74e-01 | 100.0% | 81.6% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 4.89e-01 | 98.7% | 100.0% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 44.0 | 4.95e-01 | 96.1% | 100.0% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 37.0 | 4.33e-01 | 96.1% | 97.9% |
| 1a2tA00 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 41.0 | 3.40e-01 | 71.4% | 65.9% |
| 6bioA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 42.0 | 4.77e-01 | 89.6% | 100.0% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 47.0 | 4.62e-01 | 100.0% | 78.6% |
| 2pqhB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 43.0 | 4.56e-01 | 94.8% | 89.2% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 44.0 | 4.64e-01 | 87.0% | 94.1% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 43.0 | 4.16e-01 | 97.4% | 75.6% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 47.0 | 4.37e-01 | 100.0% | 79.6% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 46.0 | 4.08e-01 | 97.4% | 86.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507338 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 50.0 | 5.55e-01 | 97.4% | 85.0% |
| 3936726 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 48.0 | 5.60e-01 | 94.8% | 94.5% |
| 3925408 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 47.0 | 5.60e-01 | 97.4% | 100.0% |
| 3502388 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 47.0 | 4.78e-01 | 94.8% | 68.0% |
| 3510676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 48.0 | 4.50e-01 | 97.4% | 55.8% |
| 3927663 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 48.0 | 5.13e-01 | 100.0% | 80.0% |
| 3926017 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 49.0 | 5.64e-01 | 100.0% | 100.0% |
| 5041943 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 46.0 | 4.46e-01 | 70.1% | 92.9% |
| 3658643 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 49.0 | 3.92e-01 | 97.4% | 42.1% |
| 3899851 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.65 | 45.0 | 4.83e-01 | 92.2% | 86.2% |
| 3217113 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 46.0 | 4.93e-01 | 96.1% | 89.2% |
| 3535437 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 46.0 | 5.07e-01 | 93.5% | 96.7% |
| 3457163 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 46.0 | 4.58e-01 | 97.4% | 72.5% |
| 3933965 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 46.0 | 5.12e-01 | 93.5% | 100.0% |
| 3516244 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 46.0 | 4.58e-01 | 94.8% | 73.8% |
| 3906249 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 47.0 | 4.82e-01 | 100.0% | 84.0% |
| 3888222 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 45.0 | 4.75e-01 | 100.0% | 85.7% |
| 3755099 | 604.1.1.97 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 | 0.62 | 47.0 | 4.57e-01 | 98.7% | 74.1% |
| 4104114 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 45.0 | 4.78e-01 | 98.7% | 92.3% |
| 4323154 | 2.1.1.341 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 | 0.61 | 41.0 | 3.65e-01 | 70.1% | 75.7% |
| 423468 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 47.0 | 4.63e-01 | 100.0% | 77.6% |
| 3542245 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 47.0 | 4.89e-01 | 83.1% | 91.4% |
| 4927385 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.60 | 39.0 | 4.55e-01 | 94.8% | 100.0% |
| 3669492 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 46.0 | 3.72e-01 | 97.4% | 44.3% |
| 3186164 | 2.1.1.11 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a | 0.59 | 44.0 | 4.10e-01 | 77.9% | 85.3% |
| 3567457 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.59 | 46.0 | 4.79e-01 | 100.0% | 95.7% |
| 3373583 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 45.0 | 4.72e-01 | 97.4% | 91.4% |
| 3512143 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 40.0 | 4.27e-01 | 98.7% | 86.2% |
| 3702924 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.55 | 46.0 | 3.40e-01 | 93.5% | 91.2% |
| 5000593 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.52 | 42.0 | 4.27e-01 | 98.7% | 89.3% |
D2
medium
residues 28-197
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 28.0 | 3.70e-01 | 93.5% | 89.7% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 27.0 | 3.62e-01 | 92.9% | 89.4% |
| 6tfjA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 27.0 | 3.20e-01 | 100.0% | 65.2% |
| 2g30A01 | 2.60.40.1150 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 29.0 | 3.38e-01 | 98.2% | 73.5% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 29.0 | 3.36e-01 | 71.2% | 72.1% |
| 1uyjA02 | 2.170.15.10 | Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 | 0.52 | 38.0 | 3.71e-01 | 77.1% | 89.5% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 29.0 | 3.56e-01 | 73.5% | 90.9% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 29.0 | 3.30e-01 | 82.9% | 75.0% |
| 3cwzB03 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.50 | 29.0 | 3.34e-01 | 92.4% | 77.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407712 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.62 | 35.0 | 4.49e-01 | 87.6% | 96.9% |
| 1005556 | 10.2.1.65 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel | 0.57 | 28.0 | 3.74e-01 | 94.1% | 89.8% |
| 3221888 | 10.32.1.218 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 | 0.51 | 34.0 | 3.88e-01 | 96.5% | 91.1% |