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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00359
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00359
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 108-226
Domain cluster:
rep: GU936714.1__ADF42387.1__S-CBS2_gp031__00031__D564-679
D2
medium
residues 235-269
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.78 | 64.0 | 5.82e-01 | 100.0% | 78.4% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.77 | 60.0 | 5.46e-01 | 100.0% | 74.5% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.74 | 58.0 | 5.64e-01 | 100.0% | 95.3% |
| 5z0uA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 48.0 | 3.76e-01 | 91.4% | 54.4% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 48.0 | 3.32e-01 | 100.0% | 30.8% |
| 4mnkA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 46.0 | 3.81e-01 | 77.1% | 80.0% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 44.0 | 3.22e-01 | 100.0% | 61.0% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 44.0 | 3.59e-01 | 88.6% | 61.5% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 3.79e-01 | 71.4% | 62.7% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 48.0 | 3.03e-01 | 100.0% | 87.9% |
| 4paaA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.59 | 46.0 | 3.10e-01 | 100.0% | 59.4% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 42.0 | 3.47e-01 | 77.1% | 81.4% |
| 1tolA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.56 | 44.0 | 3.44e-01 | 85.7% | 53.7% |
| 3dhuA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 39.0 | 3.32e-01 | 88.6% | 54.7% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.55 | 43.0 | 3.28e-01 | 100.0% | 35.6% |
| 4okcA01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.54 | 41.0 | 3.51e-01 | 97.1% | 52.2% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.53 | 43.0 | 3.44e-01 | 100.0% | 72.0% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 34.0 | 2.69e-01 | 94.3% | 47.2% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.50 | 36.0 | 2.87e-01 | 91.4% | 54.6% |
| 3s6xC03 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.50 | 37.0 | 3.62e-01 | 88.6% | 50.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.85 | 72.0 | 6.53e-01 | 100.0% | 82.0% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.85 | 71.0 | 6.73e-01 | 97.1% | 93.0% |
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.83 | 69.0 | 6.60e-01 | 100.0% | 95.3% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.82 | 72.0 | 6.66e-01 | 100.0% | 84.4% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.82 | 69.0 | 3.85e-01 | 100.0% | 8.6% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.81 | 69.0 | 6.04e-01 | 100.0% | 65.5% |
| 3498702 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.81 | 65.0 | 6.12e-01 | 94.3% | 93.3% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.81 | 65.0 | 6.17e-01 | 97.1% | 88.9% |
| 3989854 | 3761.1.1.4 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR | 0.80 | 66.0 | 5.11e-01 | 100.0% | 43.5% |
| 3401459 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.80 | 59.0 | 4.18e-01 | 82.9% | 27.3% |
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.79 | 64.0 | 6.30e-01 | 100.0% | 92.5% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.78 | 64.0 | 5.85e-01 | 100.0% | 80.0% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.78 | 64.0 | 3.75e-01 | 100.0% | 11.4% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.77 | 60.0 | 5.41e-01 | 100.0% | 73.2% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.74 | 58.0 | 5.31e-01 | 100.0% | 75.9% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.74 | 58.0 | 5.41e-01 | 100.0% | 88.0% |
| 4406214 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.73 | 49.0 | 3.56e-01 | 71.4% | 25.8% |
| 4419934 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.73 | 58.0 | 3.63e-01 | 100.0% | 21.9% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.71 | 58.0 | 3.36e-01 | 100.0% | 17.7% |
| 4177188 | 3312.1.1.0 ↗ | a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease | 0.71 | 59.0 | 4.76e-01 | 100.0% | 64.0% |
| 4218318 | 2484.1.1.295 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, RNase_H_2 | 0.70 | 50.0 | 2.89e-01 | 77.1% | 11.9% |
| 3838580 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.68 | 51.0 | 3.32e-01 | 88.6% | 17.8% |
| 3893051 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.67 | 49.0 | 4.96e-01 | 85.7% | 82.9% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 49.0 | 4.53e-01 | 85.7% | 70.0% |
| 3989407 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.67 | 51.0 | 4.31e-01 | 88.6% | 64.6% |
| 3545467 | 391.1.2.10 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st | 0.67 | 49.0 | 4.82e-01 | 85.7% | 80.0% |
| 4339502 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.66 | 50.0 | 3.96e-01 | 91.4% | 42.4% |
| 4067123 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.66 | 50.0 | 3.92e-01 | 91.4% | 42.4% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.65 | 48.0 | 4.36e-01 | 88.6% | 65.5% |
| 4130331 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.65 | 49.0 | 3.89e-01 | 91.4% | 42.4% |
| 4611006 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.64 | 48.0 | 4.05e-01 | 88.6% | 60.9% |
| 4522026 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.64 | 47.0 | 4.03e-01 | 85.7% | 63.1% |
| 3440964 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.61 | 48.0 | 2.87e-01 | 91.4% | 87.0% |
| 4931657 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.60 | 44.0 | 3.56e-01 | 88.6% | 57.5% |
| None | — | 0.59 | 48.0 | 2.74e-01 | 100.0% | 41.2% | |
| None | — | 0.59 | 48.0 | 2.76e-01 | 100.0% | 40.7% | |
| 4070240 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.59 | 48.0 | 2.75e-01 | 100.0% | 40.3% |
| 4055607 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.59 | 47.0 | 3.22e-01 | 100.0% | 63.9% |
| None | — | 0.59 | 47.0 | 2.73e-01 | 100.0% | 40.9% | |
| 3510689 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.58 | 41.0 | 4.02e-01 | 80.0% | 67.5% |
| 4477489 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.58 | 48.0 | 3.29e-01 | 100.0% | 64.8% |
| 4047645 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.58 | 48.0 | 2.74e-01 | 100.0% | 40.1% |
| 5039434 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.56 | 41.0 | 2.37e-01 | 88.6% | 9.9% |
| 3790194 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.56 | 44.0 | 4.06e-01 | 85.7% | 100.0% |
| 4972100 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.55 | 43.0 | 2.59e-01 | 88.6% | 46.9% |
| 3396358 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.51 | 36.0 | 3.49e-01 | 88.6% | 70.0% |
| 2442382 | 3856.1.1.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N | 0.51 | 39.0 | 2.63e-01 | 100.0% | 34.4% |