←Back to structures
LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00360
Bact-VirLacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00360
Identity
- Kingdom:
- phage
Quality
63.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-133
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 48.0 | 3.03e-01 | 86.1% | 15.6% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 48.0 | 4.88e-01 | 87.3% | 87.3% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.59 | 48.0 | 4.56e-01 | 87.3% | 80.4% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.58 | 41.0 | 3.75e-01 | 75.9% | 91.7% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.58 | 39.0 | 4.27e-01 | 86.1% | 90.3% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 44.0 | 4.23e-01 | 83.5% | 76.9% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.57 | 43.0 | 4.21e-01 | 89.9% | 74.7% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.56 | 40.0 | 3.63e-01 | 75.9% | 84.4% |
| 4yokA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.55 | 43.0 | 4.13e-01 | 96.2% | 72.3% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 43.0 | 4.03e-01 | 84.8% | 80.6% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.55e-01 | 75.9% | 59.4% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 36.0 | 3.91e-01 | 74.7% | 82.8% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 39.0 | 3.44e-01 | 75.9% | 85.7% |
| 4g9mB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 39.0 | 3.24e-01 | 75.9% | 98.6% |
| 2h6oA02 | 2.60.40.2810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 3.65e-01 | 96.2% | 74.2% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.53 | 39.0 | 3.04e-01 | 79.7% | 81.2% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 38.0 | 3.14e-01 | 75.9% | 61.4% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.99e-01 | 75.9% | 94.3% |
| 5h4cB00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.38e-01 | 93.7% | 48.1% |
| 2q2eB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 40.0 | 3.01e-01 | 87.3% | 41.2% |
| 5yyfA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.51 | 39.0 | 3.37e-01 | 86.1% | 98.6% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 3.42e-01 | 93.7% | 94.3% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.90e-01 | 87.3% | 85.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.85e-01 | 75.9% | 91.7% |
| 4gaaA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.51 | 40.0 | 3.19e-01 | 92.4% | 63.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596642 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 52.0 | 5.14e-01 | 86.1% | 80.0% |
| 3801941 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.62 | 50.0 | 4.43e-01 | 87.3% | 87.0% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.62 | 48.0 | 4.93e-01 | 84.8% | 88.0% |
| 3941087 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 48.0 | 4.40e-01 | 84.8% | 88.6% |
| 3635381 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 44.0 | 3.06e-01 | 78.5% | 88.5% |
| 3769507 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.58 | 40.0 | 4.21e-01 | 73.4% | 80.0% |
| 3944005 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.58 | 46.0 | 3.89e-01 | 86.1% | 64.7% |
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.58 | 39.0 | 3.99e-01 | 72.2% | 72.0% |
| 3263988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 4.08e-01 | 87.3% | 72.9% |
| 4211588 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 2.82e-01 | 86.1% | 21.3% |
| 3596871 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 40.0 | 2.56e-01 | 74.7% | 67.1% |
| 1563513 | 1.1.8.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd | 0.56 | 47.0 | 4.29e-01 | 93.7% | 87.9% |
| 5035178 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.56 | 47.0 | 4.29e-01 | 97.5% | 80.0% |
| 3846015 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.56 | 45.0 | 3.18e-01 | 89.9% | 53.6% |
| 4161622 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.55 | 42.0 | 4.28e-01 | 81.0% | 94.7% |
| 4072524 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.55 | 43.0 | 3.93e-01 | 88.6% | 70.9% |
| 2389888 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 2.93e-01 | 75.9% | 50.5% |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.54 | 39.0 | 3.90e-01 | 75.9% | 82.5% |
| 3497365 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 36.0 | 4.16e-01 | 70.9% | 100.0% |
| 3786571 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 40.0 | 2.92e-01 | 79.7% | 69.3% |
| 3505711 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.53 | 38.0 | 3.74e-01 | 75.9% | 70.6% |
| 3592541 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.76e-01 | 77.2% | 72.5% |
| 3506886 | 1.1.13.58 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Trypsin | 0.53 | 40.0 | 3.08e-01 | 83.5% | 53.5% |
| 3670066 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 38.0 | 3.08e-01 | 75.9% | 62.6% |
| 3797485 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 38.0 | 3.24e-01 | 77.2% | 46.2% |
| 5063985 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 38.0 | 3.79e-01 | 84.8% | 76.2% |
| 3876680 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.52 | 37.0 | 3.47e-01 | 75.9% | 63.0% |
| 3781440 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.51 | 37.0 | 3.73e-01 | 75.9% | 95.0% |
| 4771581 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 39.0 | 3.19e-01 | 83.5% | 70.4% |
| 3885767 | 11.1.1.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind | 0.51 | 38.0 | 3.38e-01 | 87.3% | 54.2% |
| 3438163 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.51 | 39.0 | 3.22e-01 | 88.6% | 73.9% |
| 3236689 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 33.0 | 3.88e-01 | 74.7% | 98.2% |
D2
high
residues 328-414
D3
medium
residues 1-43_562-666
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.69 | 29.0 | 4.34e-01 | 84.5% | 91.9% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 43.0 | 4.48e-01 | 77.0% | 99.3% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.57 | 26.0 | 2.93e-01 | 86.5% | 52.5% |
| 2pn5A10 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.55 | 28.0 | 2.87e-01 | 86.5% | 48.6% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 46.0 | 3.44e-01 | 90.5% | 78.9% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 25.0 | 3.09e-01 | 87.8% | 69.5% |
| 1yrzA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.42e-01 | 77.7% | 63.9% |
| 2wjsA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.59e-01 | 77.0% | 65.1% |
| 3kg8A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 37.0 | 3.97e-01 | 77.0% | 93.8% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.51 | 39.0 | 3.08e-01 | 100.0% | 39.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024938 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 41.0 | 3.77e-01 | 85.1% | 58.4% |
| 3706026 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 35.0 | 3.16e-01 | 100.0% | 47.3% |
| 4248012 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 39.0 | 4.04e-01 | 77.0% | 89.3% |
| 3178885 | 10.1.1.16 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 | 0.51 | 37.0 | 3.26e-01 | 73.6% | 57.9% |
D4
medium
residues 196-254_273-309
D5
medium
residues 310-327_419-479
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eetA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.60 | 46.0 | 3.66e-01 | 84.8% | 83.3% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 44.0 | 3.95e-01 | 81.0% | 94.8% |
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 42.0 | 4.67e-01 | 84.8% | 95.2% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 45.0 | 4.10e-01 | 82.3% | 93.5% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 37.0 | 3.99e-01 | 84.8% | 77.6% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 42.0 | 3.58e-01 | 81.0% | 67.4% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 43.0 | 3.78e-01 | 82.3% | 86.1% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 43.0 | 3.70e-01 | 82.3% | 80.3% |
| 3px5A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 43.0 | 3.82e-01 | 82.3% | 94.8% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 44.0 | 3.79e-01 | 84.8% | 88.9% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 42.0 | 3.79e-01 | 82.3% | 94.7% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 41.0 | 3.71e-01 | 81.0% | 94.8% |
| 1vmeB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 43.0 | 3.18e-01 | 89.9% | 82.5% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 41.0 | 3.81e-01 | 81.0% | 92.3% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.55 | 42.0 | 3.55e-01 | 91.1% | 47.8% |
| 3g8yA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 2.95e-01 | 93.7% | 57.0% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.54 | 42.0 | 3.51e-01 | 82.3% | 65.2% |
| 2ph5A02 | 3.30.360.30 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like | 0.54 | 40.0 | 2.76e-01 | 79.7% | 73.0% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 39.0 | 3.24e-01 | 77.2% | 83.9% |
| 2aq5A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 39.0 | 2.61e-01 | 79.7% | 29.3% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 44.0 | 3.80e-01 | 91.1% | 72.0% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.52 | 36.0 | 3.08e-01 | 73.4% | 55.5% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.73e-01 | 94.9% | 56.2% |
| 1iyxA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 40.0 | 3.48e-01 | 82.3% | 96.0% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.52 | 34.0 | 3.26e-01 | 77.2% | 56.5% |
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.34e-01 | 78.5% | 52.6% |
| 2p18A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 40.0 | 2.82e-01 | 87.3% | 36.4% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 39.0 | 3.60e-01 | 82.3% | 85.3% |
| 3eqvA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 38.0 | 3.28e-01 | 84.8% | 48.1% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 41.0 | 2.69e-01 | 91.1% | 38.8% |
| 3wmyA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 39.0 | 2.68e-01 | 86.1% | 53.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4182291 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.59 | 47.0 | 3.28e-01 | 86.1% | 76.9% |
| 4140206 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 40.0 | 3.98e-01 | 88.6% | 68.2% |
| 4266498 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.57 | 42.0 | 4.01e-01 | 79.7% | 96.8% |
| 3516114 | 216.1.1.9 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 | 0.57 | 34.0 | 3.36e-01 | 78.5% | 55.3% |
| 4058734 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.57 | 44.0 | 4.11e-01 | 82.3% | 95.8% |
| 4020977 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 41.0 | 3.06e-01 | 75.9% | 56.9% |
| 3480335 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.56 | 45.0 | 2.86e-01 | 88.6% | 39.0% |
| 149737 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.56 | 44.0 | 3.95e-01 | 86.1% | 97.3% |
| 3172156 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.55 | 40.0 | 3.71e-01 | 78.5% | 80.0% |
| 5012155 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.55 | 34.0 | 3.51e-01 | 78.5% | 66.2% |
| 139494 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.54 | 42.0 | 3.82e-01 | 86.1% | 97.3% |
| 5006851 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 35.0 | 3.67e-01 | 82.3% | 71.6% |
| 5011833 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 38.0 | 3.51e-01 | 74.7% | 68.6% |
| 4440158 | 5.1.3.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin | 0.54 | 40.0 | 2.71e-01 | 81.0% | 39.7% |
| 3595055 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.54 | 45.0 | 3.68e-01 | 91.1% | 98.6% |
| 4966092 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 34.0 | 2.99e-01 | 77.2% | 41.1% |
| 3255279 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 2.95e-01 | 98.7% | 47.0% |
| 5043349 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 45.0 | 3.68e-01 | 91.1% | 55.9% |
| 4119875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 37.0 | 3.94e-01 | 86.1% | 86.2% |
| 3856932 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 39.0 | 2.63e-01 | 78.5% | 32.8% |
| 3497129 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 42.0 | 3.85e-01 | 91.1% | 64.8% |
| 5066039 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.53 | 41.0 | 2.49e-01 | 82.3% | 21.4% |
| 5076884 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 43.0 | 3.60e-01 | 91.1% | 68.3% |
| 3606892 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.52 | 40.0 | 3.53e-01 | 84.8% | 93.6% |
| 4197404 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 39.0 | 3.29e-01 | 82.3% | 88.6% |
| 2649745 | 2484.1.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 | 0.51 | 38.0 | 2.73e-01 | 78.5% | 33.5% |
| 4675181 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 37.0 | 3.54e-01 | 77.2% | 81.1% |
| 3517705 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.62e-01 | 92.4% | 32.5% |
| 3728819 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 2.89e-01 | 81.0% | 60.5% |
| 4124320 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.51 | 39.0 | 3.31e-01 | 87.3% | 50.0% |
| 3520126 | 5.1.4.329 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 | 0.51 | 40.0 | 2.64e-01 | 87.3% | 30.0% |
| 4659440 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.50 | 39.0 | 3.39e-01 | 87.3% | 53.3% |
| 3781182 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 37.0 | 2.34e-01 | 78.5% | 22.8% |
| 3919600 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 40.0 | 2.52e-01 | 86.1% | 72.0% |
| 3989855 | 706.2.1.8 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › CFSR | 0.50 | 39.0 | 4.10e-01 | 84.8% | 98.6% |
D6
medium
residues 480-561
D7
medium
residues 711-800
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 45.0 | 4.12e-01 | 82.2% | 50.8% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 45.0 | 2.87e-01 | 84.4% | 14.7% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 42.0 | 4.17e-01 | 87.8% | 64.9% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 47.0 | 4.77e-01 | 87.8% | 81.6% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 34.0 | 2.96e-01 | 94.4% | 38.6% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 40.0 | 4.13e-01 | 83.3% | 83.1% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.55 | 42.0 | 3.98e-01 | 82.2% | 80.7% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.54 | 41.0 | 3.61e-01 | 83.3% | 100.0% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 41.0 | 4.33e-01 | 95.6% | 93.8% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 39.0 | 3.39e-01 | 96.7% | 50.7% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.28e-01 | 83.3% | 60.3% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.52 | 39.0 | 4.21e-01 | 88.9% | 96.0% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 32.0 | 3.03e-01 | 83.3% | 48.7% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 45.0 | 4.12e-01 | 100.0% | 75.2% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 39.0 | 3.31e-01 | 83.3% | 51.9% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.51e-01 | 88.9% | 60.3% |
| 1uxbA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.50 | 43.0 | 3.52e-01 | 100.0% | 80.4% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 42.0 | 3.52e-01 | 91.1% | 82.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967111 | 3338.2.1.2 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin | 0.70 | 39.0 | 3.48e-01 | 84.4% | 40.0% |
| 4010630 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.69 | 45.0 | 2.86e-01 | 82.2% | 14.0% |
| 3642150 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 43.0 | 4.28e-01 | 80.0% | 60.0% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 45.0 | 4.82e-01 | 83.3% | 81.3% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 48.0 | 4.79e-01 | 84.4% | 76.8% |
| 5051220 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 46.0 | 4.67e-01 | 84.4% | 78.9% |
| 3588729 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 42.0 | 4.16e-01 | 77.8% | 74.7% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.57 | 39.0 | 2.63e-01 | 70.0% | 40.9% |
| 4214150 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 46.0 | 4.35e-01 | 97.8% | 72.7% |
| 5048423 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.16e-01 | 86.7% | 96.5% |
| 4973665 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 39.0 | 4.06e-01 | 86.7% | 81.2% |
| 3650249 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.54 | 44.0 | 3.23e-01 | 88.9% | 33.1% |
| 3267250 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 4.21e-01 | 84.4% | 97.5% |
| 3634956 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.52 | 36.0 | 2.92e-01 | 73.3% | 84.2% |
| 5077254 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 36.0 | 2.30e-01 | 72.2% | 40.8% |
| 3382791 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.52 | 45.0 | 3.15e-01 | 97.8% | 61.6% |
| 3255692 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.51 | 41.0 | 3.54e-01 | 91.1% | 54.5% |
| 3989004 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 40.0 | 2.83e-01 | 87.8% | 35.8% |
| 3702545 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.50 | 43.0 | 2.82e-01 | 96.7% | 39.8% |