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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00361

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00361

Identity

Kingdom:
phage

Quality

58.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 175-264
PDB
D2 high residues 309-329_434-593
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 26.0 3.76e-01 81.2% 90.8%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 26.0 3.11e-01 81.2% 61.7%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 26.0 3.75e-01 97.2% 100.0%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 30.0 3.85e-01 97.8% 99.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288169 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 27.0 3.85e-01 99.4% 100.0%
5044940 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 31.0 3.80e-01 98.3% 93.6%
4973549 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 31.0 3.61e-01 100.0% 80.0%
4957137 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.51 29.0 3.60e-01 96.1% 96.0%
4009137 274.1.1.12 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.51 32.0 3.31e-01 97.8% 65.9%
5034773 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 30.0 3.70e-01 99.4% 95.5%
D3 high residues 344-421
PDB