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LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00381

Bact-Vir

LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00381

Identity

Kingdom:
phage

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-66
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.64 38.0 4.07e-01 83.3% 69.6%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 47.0 3.12e-01 100.0% 98.5%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.33e-01 92.6% 54.1%
2cxxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.79e-01 83.3% 86.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000205 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.57 39.0 4.09e-01 100.0% 80.0%
4009761 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.55 37.0 3.55e-01 88.9% 60.0%
3946151 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 35.0 3.72e-01 74.1% 97.8%
4242756 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.52 36.0 2.55e-01 75.9% 78.1%
3261845 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.65e-01 100.0% 32.9%
2570782 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.51 39.0 3.72e-01 87.0% 85.1%