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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00053

Bact-Vir

LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00053

Identity

Kingdom:
phage

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-65
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 61.0 5.40e-01 100.0% 62.8%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.75 66.0 4.99e-01 98.2% 42.1%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 63.0 5.12e-01 100.0% 71.3%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.71 61.0 5.17e-01 100.0% 73.7%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 64.0 5.02e-01 100.0% 65.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 59.0 4.34e-01 100.0% 94.6%
3ty5A01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.70 60.0 3.76e-01 100.0% 62.3%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.70 64.0 4.80e-01 100.0% 52.3%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 61.0 4.93e-01 100.0% 51.9%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.69 58.0 4.17e-01 100.0% 73.4%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 59.0 5.16e-01 100.0% 64.4%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.68 56.0 5.25e-01 100.0% 75.3%
2xvlA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.67 62.0 4.48e-01 100.0% 78.9%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 60.0 5.08e-01 100.0% 61.1%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 53.0 5.01e-01 100.0% 73.6%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 4.40e-01 100.0% 46.8%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 55.0 4.90e-01 96.5% 85.4%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 59.0 4.37e-01 100.0% 58.4%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 58.0 4.66e-01 100.0% 58.3%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 52.0 4.28e-01 94.7% 96.5%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 56.0 4.83e-01 100.0% 64.8%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 54.0 3.89e-01 100.0% 64.3%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 45.0 3.76e-01 80.7% 46.2%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.61 49.0 4.04e-01 89.5% 77.8%
3vfiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 45.0 3.77e-01 80.7% 46.2%
1glvA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 55.0 4.42e-01 100.0% 60.2%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.60 50.0 4.82e-01 100.0% 88.2%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.60 51.0 4.21e-01 98.2% 54.2%
2l6cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 45.0 3.79e-01 84.2% 53.8%
7febA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.59 40.0 3.14e-01 70.2% 65.4%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 45.0 3.70e-01 86.0% 53.2%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 49.0 3.83e-01 94.7% 46.4%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 50.0 3.35e-01 96.5% 90.9%
3mfdA02 2.30.140.30 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › 0.58 40.0 3.47e-01 100.0% 48.3%
7sf2D01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 51.0 3.59e-01 100.0% 62.9%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 42.0 3.52e-01 82.5% 47.3%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 48.0 4.33e-01 100.0% 70.2%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 43.0 3.54e-01 84.2% 52.7%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.59e-01 96.5% 56.7%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 41.0 3.45e-01 80.7% 48.1%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.70e-01 100.0% 64.5%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 49.0 3.72e-01 98.2% 73.9%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.23e-01 78.9% 42.5%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 49.0 3.54e-01 100.0% 50.3%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.54 48.0 3.82e-01 100.0% 67.5%
3emxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.41e-01 89.5% 54.0%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.37e-01 94.7% 75.0%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.39e-01 91.2% 51.1%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 47.0 3.57e-01 98.2% 66.7%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 44.0 3.07e-01 100.0% 36.5%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 45.0 3.04e-01 100.0% 92.9%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.41e-01 86.0% 50.6%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 3.94e-01 94.7% 85.2%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.54 39.0 2.68e-01 78.9% 92.6%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 40.0 3.25e-01 86.0% 95.2%
3fn9A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.21e-01 100.0% 74.8%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 37.0 2.39e-01 89.5% 59.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011630 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.79 43.0 5.12e-01 78.9% 81.6%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.75 66.0 6.07e-01 100.0% 77.3%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.48e-01 100.0% 59.8%
4976238 11.1.1.32 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.68 60.0 4.72e-01 100.0% 47.1%
3423236 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 56.0 5.19e-01 94.7% 73.3%
3756439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 4.33e-01 100.0% 39.3%
4951024 1.1.5.44 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.67 57.0 4.53e-01 100.0% 64.8%
4165803 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.66 61.0 4.10e-01 100.0% 40.0%
4408163 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.66 60.0 4.10e-01 100.0% 40.5%
3924084 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 51.0 4.29e-01 86.0% 100.0%
4619775 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.65 59.0 4.02e-01 100.0% 39.7%
4165484 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.63 57.0 3.85e-01 100.0% 39.0%
4195948 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.63 57.0 3.89e-01 100.0% 41.1%
4639481 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.63 57.0 3.89e-01 100.0% 41.1%
None 0.63 56.0 3.84e-01 100.0% 40.0%
4529669 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.62 42.0 3.20e-01 70.2% 75.7%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 55.0 4.49e-01 100.0% 65.7%
5053568 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.26e-01 71.9% 46.7%
4940358 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 51.0 3.75e-01 98.2% 55.9%
5074371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.18e-01 71.9% 38.6%
3323055 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.61 47.0 4.62e-01 100.0% 78.5%
None 0.61 45.0 3.75e-01 80.7% 46.2%
3502426 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.59 41.0 3.64e-01 80.7% 49.4%
5016280 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.59 42.0 3.74e-01 75.4% 51.8%
3218243 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 50.0 4.32e-01 91.2% 94.1%
4632256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.00e-01 82.5% 94.7%
5032471 268.1.1.1 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.58 39.0 2.87e-01 71.9% 51.2%
2081031 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 42.0 3.57e-01 80.7% 47.6%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.57 49.0 3.67e-01 98.2% 56.0%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.57 50.0 3.59e-01 96.5% 50.9%
1513116 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.57 46.0 3.60e-01 96.5% 57.1%
3682877 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 49.0 3.59e-01 98.2% 56.0%
2524015 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 38.0 3.37e-01 78.9% 46.1%
3689809 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 38.0 4.06e-01 86.0% 91.1%
3935475 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.14e-01 100.0% 25.0%
3784600 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 42.0 3.46e-01 87.7% 53.3%
4976765 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.55 44.0 3.41e-01 96.5% 54.9%
3775421 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.55 36.0 2.58e-01 70.2% 44.2%
390034 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 43.0 3.40e-01 94.7% 77.6%
4098699 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 43.0 3.54e-01 94.7% 60.0%
3834262 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.53 42.0 3.19e-01 87.7% 79.3%
4985746 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.25e-01 80.7% 59.0%
5030225 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 42.0 3.28e-01 98.2% 72.3%
3258524 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 42.0 2.79e-01 91.2% 38.3%
3848227 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.51 39.0 2.96e-01 86.0% 66.7%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 40.0 2.88e-01 98.2% 26.5%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 41.0 2.86e-01 98.2% 24.9%
3839297 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.50 39.0 2.97e-01 93.0% 38.2%
3307645 221.7.1.3 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.50 41.0 3.38e-01 100.0% 50.8%