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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00055
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-60
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qyfA03 | 1.10.10.1690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 | 0.60 | 32.0 | 3.15e-01 | 86.8% | 44.3% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 37.0 | 3.11e-01 | 84.9% | 37.1% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 35.0 | 3.17e-01 | 86.8% | 43.8% |
| 3qavA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 46.0 | 4.12e-01 | 94.3% | 81.0% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 42.0 | 2.95e-01 | 94.3% | 55.3% |
| 1vjrA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 38.0 | 3.15e-01 | 81.1% | 78.7% |
| 4yk8B00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 41.0 | 2.80e-01 | 100.0% | 24.2% |
| 4dczA00 | 3.30.70.3600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 3.35e-01 | 86.8% | 65.5% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.02e-01 | 100.0% | 35.2% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.50 | 43.0 | 3.10e-01 | 100.0% | 43.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3668540 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.59 | 44.0 | 3.12e-01 | 81.1% | 54.7% |
| 3407437 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 37.0 | 2.98e-01 | 100.0% | 30.1% |
| 5055185 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.58 | 47.0 | 4.58e-01 | 100.0% | 80.0% |
| 3626429 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.55 | 40.0 | 3.26e-01 | 79.2% | 91.4% |
| 4982761 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.55 | 36.0 | 3.11e-01 | 100.0% | 40.0% |
| 3653866 | 101.1.2.123 ↗ | alpha arrays › HTH › HTH › winged helix domain › Paf67 | 0.54 | 35.0 | 2.83e-01 | 84.9% | 35.0% |
| 3788332 | 223.2.1.18 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin_2 | 0.54 | 39.0 | 2.73e-01 | 100.0% | 23.6% |
| 3615409 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.54 | 39.0 | 3.18e-01 | 88.7% | 40.0% |
| 4015541 | 4205.1.1.0 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like | 0.53 | 42.0 | 2.79e-01 | 86.8% | 22.5% |
| 3883765 | 376.1.2.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET | 0.53 | 45.0 | 3.68e-01 | 100.0% | 59.6% |
| 3911587 | 376.1.2.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PET | 0.52 | 44.0 | 3.62e-01 | 100.0% | 60.0% |
| 3877265 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.52 | 44.0 | 3.25e-01 | 100.0% | 41.2% |
| 3823920 | 310.2.1.38 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Hobbit | 0.51 | 41.0 | 3.51e-01 | 92.5% | 62.2% |
| 5074021 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.50 | 39.0 | 3.22e-01 | 94.3% | 47.4% |