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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00057
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00057
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-97
Domain cluster:
rep: AP018399.1__BBA65735.1__X__00587__D1-83
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.68 | 47.0 | 4.63e-01 | 91.4% | 67.3% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 37.0 | 3.85e-01 | 79.6% | 58.4% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 38.0 | 3.60e-01 | 71.0% | 53.2% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 52.0 | 4.50e-01 | 100.0% | 89.0% |
| 2f51A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 43.0 | 4.14e-01 | 94.6% | 70.3% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.56 | 49.0 | 4.26e-01 | 100.0% | 91.3% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.55 | 45.0 | 4.24e-01 | 89.2% | 83.0% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.55 | 46.0 | 4.51e-01 | 92.5% | 91.3% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.54 | 39.0 | 4.05e-01 | 100.0% | 80.9% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.54 | 34.0 | 3.79e-01 | 72.0% | 80.0% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 46.0 | 4.50e-01 | 93.5% | 93.0% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.54 | 43.0 | 4.34e-01 | 100.0% | 86.3% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 3.58e-01 | 87.1% | 62.9% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 45.0 | 4.28e-01 | 92.5% | 93.5% |
| 4lqzA00 | 2.40.128.570 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 | 0.53 | 35.0 | 3.17e-01 | 96.8% | 47.3% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.44e-01 | 78.5% | 97.8% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.42e-01 | 78.5% | 91.5% |
| 2cjaA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 46.0 | 3.16e-01 | 97.8% | 29.0% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.52 | 42.0 | 3.83e-01 | 100.0% | 65.3% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 38.0 | 3.39e-01 | 78.5% | 94.2% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 43.0 | 4.08e-01 | 94.6% | 79.8% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 34.0 | 3.36e-01 | 93.5% | 61.5% |
| 4af1A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.51 | 40.0 | 3.64e-01 | 100.0% | 61.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977657 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.77 | 46.0 | 3.84e-01 | 75.3% | 36.7% |
| 3388135 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.73 | 49.0 | 5.42e-01 | 87.1% | 85.3% |
| 4996048 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 42.0 | 3.80e-01 | 73.1% | 43.1% |
| 4094714 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.68 | 45.0 | 4.74e-01 | 90.3% | 75.3% |
| 3970048 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.64 | 42.0 | 4.56e-01 | 87.1% | 80.8% |
| 4996848 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 41.0 | 3.76e-01 | 73.1% | 50.8% |
| 4975637 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.63 | 50.0 | 5.27e-01 | 93.5% | 100.0% |
| 3578131 | 223.7.1.1 ↗ | a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like | 0.61 | 40.0 | 3.38e-01 | 73.1% | 41.3% |
| 3790377 | 223.2.1.49 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C12orf66_like | 0.61 | 40.0 | 3.38e-01 | 73.1% | 41.3% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 41.0 | 4.69e-01 | 93.5% | 100.0% |
| 5001101 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.59 | 38.0 | 4.50e-01 | 92.5% | 100.0% |
| 3578222 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 40.0 | 4.26e-01 | 71.0% | 91.3% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 34.0 | 3.77e-01 | 78.5% | 74.3% |
| 3911145 | 223.7.1.1 ↗ | a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like | 0.58 | 39.0 | 3.37e-01 | 73.1% | 45.0% |
| 3240191 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 52.0 | 4.74e-01 | 100.0% | 84.8% |
| 5031007 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.57 | 44.0 | 3.95e-01 | 100.0% | 60.0% |
| 3308710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 32.0 | 3.63e-01 | 77.4% | 77.1% |
| 3408303 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 40.0 | 4.20e-01 | 90.3% | 88.7% |
| 3340120 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.54 | 43.0 | 3.69e-01 | 100.0% | 53.3% |
| 3618546 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 45.0 | 4.25e-01 | 93.5% | 82.6% |
| 3974425 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.53 | 38.0 | 3.80e-01 | 75.3% | 94.7% |
| 3483784 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 44.0 | 4.30e-01 | 93.5% | 85.7% |
| 4965137 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 41.0 | 3.69e-01 | 87.1% | 82.2% |
| 4963130 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 39.0 | 2.54e-01 | 80.6% | 53.7% |
| 5023930 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 34.0 | 3.51e-01 | 89.2% | 71.8% |
| 2876025 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 40.0 | 3.67e-01 | 84.9% | 91.3% |
| 3262317 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.51 | 38.0 | 4.16e-01 | 86.0% | 100.0% |