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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00063
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00063
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-101
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 46.0 | 3.95e-01 | 100.0% | 51.4% |
| 4am6A02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.57 | 39.0 | 3.36e-01 | 70.8% | 86.5% |
| 4hvtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 40.0 | 2.82e-01 | 78.1% | 69.8% |
| 4fo0A03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 40.0 | 3.47e-01 | 78.1% | 95.4% |
| 1dikA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 42.0 | 3.62e-01 | 86.5% | 96.1% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 3.39e-01 | 92.7% | 81.7% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 33.0 | 3.15e-01 | 83.3% | 54.7% |
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.50 | 40.0 | 3.31e-01 | 86.5% | 75.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3167262 | 3294.1.1.1 ↗ | alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H | 0.64 | 37.0 | 2.49e-01 | 100.0% | 15.4% |
| 1828346 | 1063.1.1.1 ↗ | alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85 | 0.62 | 58.0 | 3.65e-01 | 100.0% | 53.6% |
| 4160831 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.62 | 46.0 | 2.71e-01 | 77.1% | 28.1% |
| 4002132 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 53.0 | 3.71e-01 | 100.0% | 86.2% |
| 3964735 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.60 | 52.0 | 3.49e-01 | 99.0% | 45.5% |
| 3517620 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.58 | 51.0 | 3.57e-01 | 100.0% | 80.9% |
| 3697137 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.57 | 52.0 | 3.82e-01 | 100.0% | 57.7% |
| 3217875 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 50.0 | 3.46e-01 | 100.0% | 70.3% |
| 3658083 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.56 | 49.0 | 3.34e-01 | 99.0% | 51.9% |
| None | — | 0.56 | 50.0 | 3.55e-01 | 100.0% | 46.7% | |
| 3190533 | 109.4.1.3564 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_PRP39_N, HAT_PRP39_C | 0.56 | 39.0 | 2.46e-01 | 70.8% | 19.8% |
| 4836806 | 1063.1.1.1 ↗ | alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85 | 0.56 | 50.0 | 3.29e-01 | 100.0% | 62.3% |
| 4861058 | 304.31.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red | 0.55 | 23.0 | 2.15e-01 | 86.5% | 30.1% |
| 3218266 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 39.0 | 2.65e-01 | 74.0% | 90.1% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 48.0 | 3.23e-01 | 100.0% | 88.1% |
| 3246432 | 2008.1.1.24 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9 | 0.54 | 42.0 | 2.73e-01 | 83.3% | 82.1% |
| 3632323 | 109.4.1.1580 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C | 0.54 | 39.0 | 2.62e-01 | 76.0% | 36.6% |
| 3640935 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.53 | 47.0 | 3.56e-01 | 99.0% | 83.4% |
| 3600020 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 39.0 | 2.55e-01 | 80.2% | 81.5% |
| 4399128 | 7581.1.1.30 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C | 0.52 | 40.0 | 2.70e-01 | 81.2% | 58.1% |
| 4258272 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.52 | 42.0 | 3.36e-01 | 85.4% | 85.3% |
| 3577202 | 210.1.2.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta | 0.52 | 40.0 | 3.05e-01 | 83.3% | 66.8% |
| 3238364 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.52 | 38.0 | 2.60e-01 | 77.1% | 51.7% |
| 3628704 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 45.0 | 3.14e-01 | 100.0% | 79.7% |
| 5038015 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.51 | 45.0 | 2.95e-01 | 100.0% | 30.7% |
| 3194488 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 45.0 | 2.93e-01 | 99.0% | 76.9% |
| 4930399 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 36.0 | 3.07e-01 | 72.9% | 61.8% |
| 4160692 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.51 | 43.0 | 3.38e-01 | 95.8% | 83.1% |
| 3268584 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.51 | 44.0 | 3.25e-01 | 100.0% | 82.1% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 38.0 | 3.45e-01 | 100.0% | 59.2% |
| 4647653 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.50 | 40.0 | 2.66e-01 | 87.5% | 89.4% |
| 3709549 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 38.0 | 3.21e-01 | 81.2% | 70.3% |