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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00119
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00119
Identity
- Kingdom:
- phage
Quality
74.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-137
D2
high
residues 196-345
Domain cluster:
rep: NC_073317.1__YP_010749072.1__QCF72_gp16__00016__D4-119
D3
medium
residues 351-403
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 3.00e-01 | 71.7% | 81.7% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 43.0 | 3.08e-01 | 96.2% | 55.6% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 37.0 | 2.35e-01 | 77.4% | 44.9% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.50 | 34.0 | 3.42e-01 | 81.1% | 71.7% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.50 | 34.0 | 3.00e-01 | 73.6% | 87.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3440138 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.57 | 37.0 | 3.37e-01 | 71.7% | 45.0% |
| 4975329 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 32.0 | 2.33e-01 | 83.0% | 17.7% |
| 3365774 | 109.4.1.1560 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, E_motif | 0.52 | 35.0 | 2.20e-01 | 73.6% | 77.7% |
| 3625576 | 3850.1.1.0 ↗ | few secondary structure elements › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain | 0.51 | 34.0 | 3.36e-01 | 71.7% | 81.7% |
| 4887026 | 205.1.1.52 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_Nqo3, Fer4_NDSU1 | 0.50 | 34.0 | 3.14e-01 | 75.5% | 51.9% |
| 4121218 | 387.1.1.24 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 | 0.50 | 35.0 | 3.49e-01 | 77.4% | 89.1% |
D4
medium
residues 404-472_486-505
D5
medium
residues 506-539_632-780
Domain cluster:
rep: MN136198.2__QEM43051.1__AC4HA13_0076__00076__D266-456
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8b55A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 68.0 | 6.97e-01 | 97.8% | 94.4% |
| 2jkbA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 65.0 | 6.38e-01 | 89.1% | 90.6% |
| 4c1wA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 64.0 | 6.34e-01 | 88.5% | 92.0% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.23e-01 | 97.8% | 87.1% |
| 3flpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 70.0 | 6.58e-01 | 99.5% | 89.9% |
| 2sliA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 64.0 | 6.26e-01 | 90.2% | 90.8% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 57.0 | 5.28e-01 | 83.6% | 82.2% |
| 1dhkB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 58.0 | 5.72e-01 | 95.1% | 81.0% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 56.0 | 5.22e-01 | 84.2% | 80.8% |
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 62.0 | 6.29e-01 | 97.8% | 93.4% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 54.0 | 5.37e-01 | 98.9% | 78.1% |
| 1ux6A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 55.0 | 5.32e-01 | 85.2% | 94.7% |
| 3o0wA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 59.0 | 5.38e-01 | 91.8% | 82.5% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 47.0 | 4.82e-01 | 83.1% | 74.0% |
| 3w9aA00 | 2.60.120.1160 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 56.0 | 5.10e-01 | 92.3% | 68.4% |
| 3qcwA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 59.0 | 5.77e-01 | 97.8% | 87.7% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 58.0 | 5.29e-01 | 95.6% | 82.4% |
| 1yrzA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 49.0 | 4.79e-01 | 83.6% | 80.0% |
| 5jowA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 4.85e-01 | 95.6% | 80.5% |
| 4cciA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 53.0 | 4.72e-01 | 95.6% | 83.5% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999349 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.80 | 73.0 | 6.97e-01 | 97.8% | 83.9% |
| 3754155 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.80 | 62.0 | 4.64e-01 | 97.8% | 36.0% |
| 5012885 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.80 | 66.0 | 6.13e-01 | 92.3% | 70.9% |
| 4121558 | 10.1.1.25 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N | 0.79 | 75.0 | 6.48e-01 | 99.5% | 75.2% |
| 4399861 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.79 | 75.0 | 6.54e-01 | 99.5% | 78.1% |
| 4937478 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.78 | 66.0 | 6.23e-01 | 90.2% | 76.2% |
| 3231485 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.76 | 54.0 | 5.76e-01 | 97.8% | 82.5% |
| 4232261 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.76 | 60.0 | 6.30e-01 | 97.8% | 89.7% |
| 3827484 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.75 | 71.0 | 6.31e-01 | 98.4% | 90.2% |
| 4214272 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.74 | 60.0 | 5.27e-01 | 83.6% | 74.6% |
| 169992 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.74 | 70.0 | 6.58e-01 | 99.5% | 89.9% |
| 4937334 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.74 | 61.0 | 5.94e-01 | 89.6% | 78.0% |
| 3320577 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.74 | 60.0 | 5.30e-01 | 84.7% | 78.1% |
| 3342551 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.73 | 59.0 | 5.22e-01 | 84.2% | 73.1% |
| 3342087 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.73 | 59.0 | 5.54e-01 | 83.6% | 77.5% |
| 3317594 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.73 | 59.0 | 5.11e-01 | 83.6% | 75.8% |
| 3457985 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.73 | 59.0 | 5.64e-01 | 84.2% | 81.7% |
| 4596967 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.72 | 58.0 | 5.31e-01 | 83.6% | 80.7% |
| 4114695 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.72 | 58.0 | 4.98e-01 | 83.6% | 72.4% |
| 4293129 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.72 | 58.0 | 5.15e-01 | 83.6% | 72.8% |
| 3437038 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.71 | 58.0 | 5.08e-01 | 84.2% | 81.5% |
| 4425437 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.71 | 60.0 | 5.20e-01 | 89.1% | 76.4% |
| 3793405 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.70 | 60.0 | 5.92e-01 | 97.8% | 83.6% |
| 3810135 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.70 | 61.0 | 5.26e-01 | 90.7% | 75.9% |
| 3361739 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.70 | 57.0 | 5.05e-01 | 83.6% | 80.0% |
| 2541746 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.70 | 61.0 | 5.98e-01 | 97.8% | 85.6% |
| 1100 | 10.1.1.32 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser | 0.70 | 54.0 | 5.26e-01 | 98.9% | 74.1% |
| 4356192 | 10.1.1.45 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Bact_lectin | 0.69 | 55.0 | 5.01e-01 | 82.0% | 96.2% |
| 3906069 | 10.1.1.20 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C | 0.69 | 56.0 | 5.24e-01 | 85.2% | 90.6% |
| 3453561 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.69 | 53.0 | 4.75e-01 | 79.2% | 78.8% |
| 3928299 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.68 | 55.0 | 5.76e-01 | 97.8% | 90.6% |
| 3378528 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.68 | 55.0 | 5.14e-01 | 83.6% | 89.5% |
| 3299276 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.68 | 61.0 | 5.45e-01 | 95.1% | 80.8% |
| 5068490 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.68 | 49.0 | 4.89e-01 | 87.4% | 72.4% |
| 3394965 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.67 | 62.0 | 6.05e-01 | 97.8% | 93.5% |
| 3388516 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.67 | 60.0 | 6.11e-01 | 97.8% | 96.1% |
| 3474379 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 61.0 | 5.91e-01 | 97.8% | 94.0% |
| 3458331 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.65 | 59.0 | 5.23e-01 | 96.2% | 78.5% |
| 3482450 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.65 | 59.0 | 5.70e-01 | 98.4% | 87.0% |
| 3424631 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.64 | 58.0 | 5.09e-01 | 96.2% | 81.1% |
| 3370179 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.64 | 57.0 | 4.99e-01 | 95.1% | 73.3% |
| 4937307 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 51.0 | 5.04e-01 | 83.1% | 79.5% |
| 4012640 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 57.0 | 5.06e-01 | 94.5% | 68.8% |
| 3704678 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.64 | 49.0 | 5.20e-01 | 83.1% | 89.7% |
| 3570861 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.63 | 59.0 | 5.48e-01 | 97.8% | 83.6% |
| 4018271 | 10.1.1.16 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 | 0.63 | 58.0 | 5.21e-01 | 98.9% | 98.0% |
| 3903925 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.62 | 54.0 | 5.48e-01 | 97.8% | 92.2% |
| 3485287 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.62 | 57.0 | 5.52e-01 | 97.8% | 93.2% |
| 3507448 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.62 | 58.0 | 5.55e-01 | 97.8% | 91.7% |
| 2102357 | 10.1.1.20 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C | 0.62 | 56.0 | 5.30e-01 | 96.2% | 93.5% |
| 1563554 | 10.1.1.53 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › G7C_C | 0.62 | 51.0 | 5.07e-01 | 87.4% | 90.1% |
| 3394892 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.61 | 56.0 | 5.33e-01 | 97.8% | 87.6% |
| 3940139 | 10.1.1.83 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C | 0.60 | 53.0 | 4.98e-01 | 95.1% | 92.7% |
| 3680309 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.57 | 51.0 | 4.62e-01 | 95.1% | 88.6% |
| 3505843 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.54 | 47.0 | 4.40e-01 | 92.3% | 79.6% |