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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00126

Bact-Vir

LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00126

Identity

Kingdom:
phage

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-38
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5azpB01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.78 56.0 3.17e-01 81.6% 7.9%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.72 59.0 3.39e-01 89.5% 62.1%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.67 51.0 3.80e-01 92.1% 31.2%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 51.0 3.69e-01 86.8% 31.8%
7z7vF03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.64 55.0 4.26e-01 97.4% 72.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937068 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.72 50.0 4.38e-01 81.6% 48.3%
3936611 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.70 55.0 4.36e-01 89.5% 58.7%
3708295 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 52.0 3.05e-01 92.1% 10.9%