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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00171
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00171
Identity
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c3pD00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.55 | 43.0 | 2.96e-01 | 89.3% | 38.9% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 32.0 | 3.51e-01 | 73.3% | 72.9% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.54 | 46.0 | 3.80e-01 | 98.7% | 89.0% |
| 6pw7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.52 | 42.0 | 4.30e-01 | 88.0% | 97.2% |
| 1y9qA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 44.0 | 4.28e-01 | 100.0% | 92.9% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 38.0 | 3.76e-01 | 98.7% | 75.6% |
| 3b7hA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 41.0 | 4.15e-01 | 93.3% | 94.7% |
| 3fmyA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 35.0 | 3.75e-01 | 85.3% | 84.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3710492 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.64 | 56.0 | 3.47e-01 | 100.0% | 26.1% |
| 3789320 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.59 | 52.0 | 3.72e-01 | 100.0% | 35.2% |
| 5015485 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 36.0 | 3.84e-01 | 88.0% | 75.4% |
| 3965190 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.53 | 36.0 | 3.83e-01 | 88.0% | 83.1% |
| 3279630 | 2008.1.1.35 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NgoMIV_restric | 0.53 | 36.0 | 2.56e-01 | 72.0% | 70.5% |
| 5022196 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 40.0 | 2.79e-01 | 82.7% | 97.0% |
| 4985758 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.52 | 40.0 | 3.75e-01 | 82.7% | 75.8% |
| 3428737 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.51 | 42.0 | 3.04e-01 | 92.0% | 87.4% |
| 3744306 | 101.1.1.94 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Reb1_MybAD | 0.51 | 40.0 | 4.09e-01 | 100.0% | 92.9% |