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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00175
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00175
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-88
Domain cluster:
rep: JQ312117.1__AFH19780.1__7-7-1_00082__00082__D8-69
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0kA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 47.0 | 3.61e-01 | 85.1% | 60.6% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 41.0 | 4.51e-01 | 86.2% | 95.5% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.54e-01 | 85.1% | 97.0% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.57 | 47.0 | 3.59e-01 | 90.8% | 95.2% |
| 4rl1A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.57 | 43.0 | 4.59e-01 | 90.8% | 100.0% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 43.0 | 4.20e-01 | 89.7% | 100.0% |
| 3fndA02 | 3.40.5.30 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › (Trans)glycosidases - domain 2 | 0.54 | 29.0 | 3.61e-01 | 81.6% | 100.0% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.53 | 40.0 | 4.15e-01 | 95.4% | 91.0% |
| 3afgB01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.53 | 41.0 | 4.19e-01 | 92.0% | 86.2% |
| 1f0xA01 | 3.30.70.610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 | 0.53 | 41.0 | 4.03e-01 | 88.5% | 85.0% |
| 1b1xA03 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 38.0 | 3.09e-01 | 80.5% | 74.2% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.52 | 37.0 | 4.05e-01 | 88.5% | 100.0% |
| 5fxdA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.51 | 42.0 | 3.13e-01 | 92.0% | 54.9% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 40.0 | 3.86e-01 | 96.6% | 78.0% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 4.15e-01 | 94.3% | 91.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068884 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 46.0 | 4.85e-01 | 89.7% | 100.0% |
| 3494489 | 331.9.1.12 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › BBS2_pf | 0.57 | 46.0 | 4.33e-01 | 90.8% | 80.9% |
| 3731902 | 304.107.1.7 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD | 0.57 | 47.0 | 3.16e-01 | 96.6% | 74.2% |
| 4032055 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 38.0 | 4.20e-01 | 89.7% | 98.5% |
| 3386186 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.54 | 43.0 | 4.34e-01 | 89.7% | 89.4% |
| 5082240 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.54 | 41.0 | 4.21e-01 | 95.4% | 90.0% |
| 3200099 | 2486.1.1.7 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 | 0.53 | 41.0 | 2.75e-01 | 83.9% | 53.3% |
| 3477884 | 4076.3.1.6 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N | 0.53 | 42.0 | 4.29e-01 | 89.7% | 87.1% |
| 5041211 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 45.0 | 4.28e-01 | 94.3% | 81.0% |
| 3399421 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.53 | 41.0 | 4.22e-01 | 95.4% | 91.3% |
| 5001296 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.53 | 37.0 | 4.05e-01 | 88.5% | 100.0% |
| 4926952 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 38.0 | 4.12e-01 | 90.8% | 98.6% |
| 3268570 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.52 | 41.0 | 3.90e-01 | 86.2% | 99.0% |
| 3389260 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.52 | 38.0 | 3.98e-01 | 89.7% | 90.0% |
| None | — | 0.51 | 43.0 | 2.57e-01 | 100.0% | 49.7% | |
| 5030717 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.51 | 40.0 | 4.10e-01 | 90.8% | 93.8% |