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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00258
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
47.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-143
D2
high
residues 370-543
Domain cluster:
rep: OR050627.1__WIC41296.1__MA9V1_032__00032__D126-295
D3
high
residues 570-605_664-805
D4
medium
residues 1-22_42-74
D5
medium
residues 218-247_311-369
D6
medium
residues 1285-1376
Domain cluster:
rep: KJ019128.1__AIX38078.1__Syn7803US88_77__00077__D502-594
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 49.0 | 5.22e-01 | 88.0% | 92.3% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 53.0 | 5.17e-01 | 90.2% | 86.7% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 5.25e-01 | 91.3% | 89.5% |
| 8ehtB01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.64 | 49.0 | 4.25e-01 | 83.7% | 100.0% |
| 1sixA00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.63 | 49.0 | 4.23e-01 | 87.0% | 74.5% |
| 2xbtA00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.61 | 50.0 | 4.26e-01 | 91.3% | 93.7% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 47.0 | 4.16e-01 | 87.0% | 100.0% |
| 4gucA00 | 2.60.40.3720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 48.0 | 4.50e-01 | 87.0% | 73.9% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 47.0 | 4.10e-01 | 87.0% | 96.6% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 47.0 | 3.65e-01 | 89.1% | 66.8% |
| 2zoeB02 | 2.60.120.1080 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.97e-01 | 87.0% | 74.3% |
| 4iihB04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 3.93e-01 | 72.8% | 80.4% |
| 7nitA06 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 46.0 | 3.82e-01 | 88.0% | 97.7% |
| 3igqC00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.58 | 50.0 | 4.08e-01 | 100.0% | 84.8% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 45.0 | 4.06e-01 | 88.0% | 100.0% |
| 2di7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 49.0 | 4.72e-01 | 97.8% | 90.7% |
| 3qjoA02 | 2.60.310.10 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain | 0.57 | 41.0 | 3.88e-01 | 76.1% | 76.8% |
| 1a8mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 3.88e-01 | 88.0% | 96.1% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 38.0 | 2.94e-01 | 70.7% | 76.1% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.55 | 38.0 | 3.53e-01 | 71.7% | 81.8% |
| 2y3aA02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 43.0 | 3.82e-01 | 89.1% | 90.0% |
| 1vzyA01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.54 | 46.0 | 3.57e-01 | 100.0% | 78.2% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 41.0 | 3.92e-01 | 84.8% | 88.9% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 27.0 | 3.05e-01 | 95.7% | 63.6% |
| 3n2oC01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.52 | 43.0 | 3.52e-01 | 96.7% | 71.2% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.52 | 41.0 | 3.59e-01 | 87.0% | 81.9% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 38.0 | 4.13e-01 | 82.6% | 98.7% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.51 | 35.0 | 3.26e-01 | 71.7% | 74.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3408311 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 52.0 | 5.13e-01 | 91.3% | 83.0% |
| 5041590 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 52.0 | 4.99e-01 | 92.4% | 94.3% |
| 1758364 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.62 | 51.0 | 4.88e-01 | 90.2% | 88.0% |
| 3893006 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 51.0 | 4.92e-01 | 91.3% | 88.6% |
| 4876557 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.62 | 49.0 | 4.31e-01 | 87.0% | 81.4% |
| 3392540 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.61 | 48.0 | 3.91e-01 | 89.1% | 76.8% |
| 3764507 | 11.1.1.360 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYDIN_VesB_CFA65-like_Ig | 0.60 | 49.0 | 4.52e-01 | 91.3% | 74.2% |
| 1884973 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.60 | 47.0 | 4.06e-01 | 87.0% | 92.0% |
| 4932806 | 11.1.5.132 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF11 | 0.59 | 45.0 | 4.33e-01 | 81.5% | 87.6% |
| 2523954 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.58 | 45.0 | 3.89e-01 | 85.9% | 74.5% |
| 4928236 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.58 | 40.0 | 2.71e-01 | 70.7% | 96.8% |
| 4314728 | 11.1.1.306 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_bMG2 | 0.58 | 47.0 | 4.29e-01 | 91.3% | 93.8% |
| 5033234 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.57 | 47.0 | 4.10e-01 | 91.3% | 78.6% |
| 4942248 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 45.0 | 4.00e-01 | 90.2% | 65.5% |
| 4027566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 45.0 | 3.95e-01 | 90.2% | 84.7% |
| 4386251 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.56 | 42.0 | 4.17e-01 | 88.0% | 77.9% |
| None | — | 0.55 | 47.0 | 3.49e-01 | 100.0% | 74.8% | |
| 3577792 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.55 | 42.0 | 3.88e-01 | 83.7% | 90.0% |
| 3267716 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 42.0 | 3.89e-01 | 89.1% | 90.0% |
| 3914739 | 223.1.1.78 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC | 0.53 | 42.0 | 3.40e-01 | 91.3% | 97.1% |
| 3957563 | 12.1.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF3459 | 0.53 | 35.0 | 3.84e-01 | 77.2% | 85.3% |
| 4463657 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 30.0 | 3.40e-01 | 84.8% | 75.4% |
| 5028974 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.51 | 40.0 | 3.70e-01 | 87.0% | 96.0% |
| 2556060 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.51 | 38.0 | 4.06e-01 | 83.7% | 96.2% |
| 3496218 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 40.0 | 3.20e-01 | 91.3% | 51.6% |
| 3874549 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.50 | 39.0 | 3.58e-01 | 85.9% | 98.4% |
D7
medium
residues 1542-1627
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00283__D774-861