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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00289
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00289
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-121
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2je6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.61 | 50.0 | 3.69e-01 | 88.7% | 95.8% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 27.0 | 3.43e-01 | 72.2% | 74.1% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.56 | 46.0 | 3.60e-01 | 92.8% | 93.4% |
| 2wqlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 43.0 | 3.76e-01 | 85.6% | 63.2% |
| 4l4qB01 | 3.30.300.280 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, C-terminal domain | 0.54 | 42.0 | 3.70e-01 | 83.5% | 81.4% |
| 1iugA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 31.0 | 3.02e-01 | 86.6% | 48.6% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.54 | 38.0 | 3.95e-01 | 76.3% | 80.9% |
| 2e50B02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.53 | 46.0 | 4.45e-01 | 99.0% | 98.2% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.53 | 42.0 | 4.26e-01 | 91.8% | 87.6% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 32.0 | 3.19e-01 | 82.5% | 57.7% |
| 3eeaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 43.0 | 3.70e-01 | 90.7% | 94.1% |
| 6p58A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 42.0 | 3.62e-01 | 89.7% | 94.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4662296 | 331.12.1.1 ↗ | a+b two layers › TBP-like › YugN-like › YugN-like › YugN | 0.54 | 38.0 | 3.70e-01 | 86.6% | 66.1% |
| 4991990 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.53 | 40.0 | 4.01e-01 | 80.4% | 92.0% |
| 3880624 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 36.0 | 3.82e-01 | 82.5% | 85.0% |
| 3656217 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.51 | 37.0 | 2.54e-01 | 76.3% | 83.6% |
| 3599237 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.51 | 42.0 | 4.36e-01 | 92.8% | 100.0% |
| 3938050 | 223.2.1.31 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 | 0.51 | 42.0 | 3.63e-01 | 91.8% | 99.4% |
| 3959235 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 35.0 | 2.60e-01 | 74.2% | 26.4% |
| 5035119 | 331.16.1.1 ↗ | a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 | 0.50 | 33.0 | 3.45e-01 | 76.3% | 73.3% |