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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00313
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00313
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-132
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08447.19 best | PAS_3 | 36.8 | 5.50e-09 | 88.8% | 76.4% |
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b02A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.89 | 77.0 | 6.94e-01 | 91.3% | 76.9% |
| 4dj3B02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.88 | 77.0 | 6.06e-01 | 93.8% | 54.5% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.85 | 79.0 | 6.77e-01 | 100.0% | 70.5% |
| 3h9wA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.85 | 78.0 | 6.96e-01 | 98.8% | 77.1% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.85 | 71.0 | 6.26e-01 | 91.3% | 64.0% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.84 | 74.0 | 6.40e-01 | 95.0% | 67.5% |
| 3rtyB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.84 | 72.0 | 6.38e-01 | 91.3% | 75.2% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.84 | 76.0 | 6.63e-01 | 97.5% | 72.8% |
| 4hh2C04 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.84 | 73.0 | 6.34e-01 | 93.8% | 65.8% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.83 | 71.0 | 6.22e-01 | 91.3% | 64.0% |
| 3eehA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.83 | 72.0 | 6.25e-01 | 92.5% | 69.0% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.82 | 76.0 | 6.23e-01 | 100.0% | 62.3% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.82 | 73.0 | 6.67e-01 | 95.0% | 76.5% |
| 2r78C00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.82 | 69.0 | 6.00e-01 | 91.3% | 62.1% |
| 3bwlB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.81 | 69.0 | 5.90e-01 | 91.3% | 61.0% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.80 | 70.0 | 6.05e-01 | 93.8% | 68.6% |
| 3mjqA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.79 | 68.0 | 6.19e-01 | 93.8% | 71.0% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.79 | 70.0 | 6.23e-01 | 96.2% | 71.4% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.79 | 67.0 | 5.93e-01 | 90.0% | 68.2% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.78 | 71.0 | 5.45e-01 | 100.0% | 75.6% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.78 | 69.0 | 6.00e-01 | 97.5% | 68.1% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.77 | 65.0 | 5.74e-01 | 91.3% | 65.8% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.77 | 69.0 | 5.58e-01 | 97.5% | 55.5% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.77 | 70.0 | 5.37e-01 | 100.0% | 47.2% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.76 | 65.0 | 5.49e-01 | 93.8% | 62.3% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.74 | 66.0 | 6.01e-01 | 98.8% | 77.1% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.74 | 62.0 | 5.48e-01 | 93.8% | 68.1% |
| 3cloC01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.73 | 65.0 | 4.91e-01 | 100.0% | 53.4% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.71 | 60.0 | 5.32e-01 | 95.0% | 73.5% |
| 5xgbA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 58.0 | 5.15e-01 | 95.0% | 66.9% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 54.0 | 4.40e-01 | 86.3% | 84.5% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 50.0 | 4.61e-01 | 93.8% | 73.3% |
| 3luqB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 50.0 | 4.50e-01 | 95.0% | 68.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 51.0 | 3.94e-01 | 96.2% | 43.3% |
| 3p8aA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 47.0 | 3.81e-01 | 90.0% | 90.6% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.58 | 40.0 | 3.38e-01 | 71.2% | 68.3% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.57 | 44.0 | 3.43e-01 | 85.0% | 66.7% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 3.71e-01 | 92.5% | 81.2% |
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.68e-01 | 95.0% | 58.1% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.61e-01 | 91.3% | 58.9% |
| 3pu2B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 43.0 | 3.57e-01 | 88.7% | 61.4% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.54 | 45.0 | 3.39e-01 | 95.0% | 43.8% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 46.0 | 3.93e-01 | 97.5% | 86.4% |
| 5zc1D00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 4.07e-01 | 88.7% | 80.6% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 43.0 | 3.93e-01 | 91.3% | 80.9% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 37.0 | 3.47e-01 | 73.8% | 73.0% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.40e-01 | 100.0% | 91.7% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 41.0 | 3.40e-01 | 90.0% | 61.1% |
| 3obqA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 40.0 | 3.38e-01 | 86.3% | 81.6% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.47e-01 | 95.0% | 90.8% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.51 | 37.0 | 3.11e-01 | 85.0% | 41.2% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 33.0 | 3.28e-01 | 81.2% | 61.4% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3064449 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.94 | 82.0 | 7.18e-01 | 91.3% | 67.3% |
| 5045728 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.92 | 87.0 | 7.20e-01 | 100.0% | 63.8% |
| 4931489 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.92 | 87.0 | 7.30e-01 | 100.0% | 66.4% |
| 4950607 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.92 | 86.0 | 6.31e-01 | 100.0% | 44.2% |
| 4950291 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.92 | 84.0 | 7.20e-01 | 97.5% | 68.3% |
| 5018633 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.91 | 86.0 | 6.96e-01 | 100.0% | 60.0% |
| 4950584 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.91 | 86.0 | 7.12e-01 | 100.0% | 64.6% |
| 4975335 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.91 | 86.0 | 7.58e-01 | 100.0% | 75.5% |
| 5034550 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.91 | 85.0 | 7.42e-01 | 100.0% | 74.8% |
| 4949125 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.91 | 85.0 | 6.73e-01 | 100.0% | 56.0% |
| 5008203 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.91 | 79.0 | 6.82e-01 | 91.3% | 66.1% |
| 5055894 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.91 | 80.0 | 6.75e-01 | 93.8% | 63.2% |
| 4970452 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.91 | 85.0 | 7.59e-01 | 98.8% | 78.1% |
| 5018491 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.91 | 85.0 | 5.52e-01 | 100.0% | 27.5% |
| 4980664 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.90 | 85.0 | 7.25e-01 | 100.0% | 70.0% |
| 4940001 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.90 | 78.0 | 7.15e-01 | 91.3% | 76.0% |
| 5001953 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.90 | 80.0 | 6.98e-01 | 95.0% | 67.8% |
| 5062841 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.89 | 84.0 | 6.87e-01 | 100.0% | 64.4% |
| 5006515 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.89 | 79.0 | 6.85e-01 | 93.8% | 69.6% |
| 4977960 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.89 | 84.0 | 4.81e-01 | 100.0% | 13.3% |
| 4960111 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.89 | 81.0 | 6.70e-01 | 96.2% | 62.3% |
| 5005720 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.89 | 83.0 | 7.03e-01 | 100.0% | 66.4% |
| 5062837 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.89 | 84.0 | 7.04e-01 | 100.0% | 67.2% |
| 5069527 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.89 | 81.0 | 7.20e-01 | 97.5% | 76.4% |
| 5045368 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.89 | 83.0 | 6.71e-01 | 100.0% | 60.7% |
| 4932136 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.88 | 83.0 | 7.21e-01 | 100.0% | 74.8% |
| 4940002 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.88 | 82.0 | 5.97e-01 | 100.0% | 42.5% |
| 4959374 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.88 | 82.0 | 7.16e-01 | 100.0% | 75.7% |
| 4931715 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.88 | 82.0 | 7.16e-01 | 100.0% | 72.2% |
| 5049662 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.88 | 77.0 | 6.72e-01 | 93.8% | 67.8% |
| 4986762 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.88 | 82.0 | 5.81e-01 | 100.0% | 37.7% |
| 4020859 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.88 | 75.0 | 6.46e-01 | 91.3% | 68.3% |
| 5018818 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.88 | 81.0 | 5.56e-01 | 100.0% | 33.2% |
| 5018462 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.87 | 78.0 | 5.29e-01 | 95.0% | 31.5% |
| 5019133 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.87 | 79.0 | 6.47e-01 | 96.2% | 63.0% |
| 5049836 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.87 | 79.0 | 6.31e-01 | 96.2% | 55.2% |
| 4958961 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.87 | 82.0 | 6.72e-01 | 100.0% | 63.7% |
| 5008034 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.87 | 76.0 | 6.47e-01 | 93.8% | 63.2% |
| 4984595 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.87 | 82.0 | 5.57e-01 | 100.0% | 33.6% |
| 4988657 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.87 | 81.0 | 6.86e-01 | 100.0% | 66.4% |
| 5005613 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.87 | 76.0 | 6.28e-01 | 93.8% | 57.0% |
| 5053529 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.87 | 75.0 | 6.53e-01 | 92.5% | 68.7% |
| 4988348 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.87 | 80.0 | 5.25e-01 | 100.0% | 26.9% |
| 4962732 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.87 | 77.0 | 6.60e-01 | 95.0% | 66.7% |
| 5048056 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.86 | 77.0 | 6.56e-01 | 96.2% | 64.8% |
| 4299801 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.86 | 77.0 | 6.61e-01 | 95.0% | 65.8% |
| 4979995 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.86 | 80.0 | 5.53e-01 | 100.0% | 35.4% |
| 4950583 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.86 | 79.0 | 6.81e-01 | 98.8% | 67.5% |
| 4975336 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.86 | 79.0 | 6.19e-01 | 100.0% | 53.8% |
| 4060191 | 223.1.1.85 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3+PAS_9 | 0.86 | 80.0 | 5.29e-01 | 100.0% | 28.3% |
| 5019127 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.86 | 80.0 | 4.95e-01 | 100.0% | 21.5% |
| 5083330 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.85 | 80.0 | 4.61e-01 | 100.0% | 15.0% |
| 3968145 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.85 | 80.0 | 6.85e-01 | 100.0% | 70.0% |
| 4988947 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.85 | 77.0 | 6.26e-01 | 98.8% | 57.2% |
| 5044350 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.85 | 78.0 | 6.44e-01 | 98.8% | 64.4% |
| 3018456 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.85 | 79.0 | 6.19e-01 | 100.0% | 54.1% |
| 3972542 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.85 | 79.0 | 6.21e-01 | 100.0% | 54.8% |
| 4950593 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.85 | 72.0 | 5.98e-01 | 91.3% | 57.0% |
| 3926942 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.85 | 78.0 | 6.77e-01 | 97.5% | 70.4% |
| 5045304 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.85 | 77.0 | 6.67e-01 | 97.5% | 67.0% |
| 5004659 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.85 | 73.0 | 6.46e-01 | 91.3% | 68.2% |
| 3972417 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.85 | 75.0 | 6.67e-01 | 95.0% | 71.8% |
| 4957638 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.85 | 74.0 | 6.52e-01 | 95.0% | 69.6% |
| 2710376 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.85 | 79.0 | 6.25e-01 | 100.0% | 54.3% |
| 4980685 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.85 | 74.0 | 6.47e-01 | 93.8% | 66.1% |
| 3392488 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.85 | 78.0 | 6.55e-01 | 100.0% | 66.2% |
| 5069591 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.85 | 75.0 | 5.89e-01 | 95.0% | 50.3% |
| 3824215 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.84 | 78.0 | 6.35e-01 | 100.0% | 61.4% |
| 4873829 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.84 | 73.0 | 6.96e-01 | 93.8% | 87.1% |
| 3640571 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.84 | 77.0 | 5.94e-01 | 98.8% | 50.3% |
| 5019275 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.84 | 77.0 | 6.76e-01 | 100.0% | 70.4% |
| 1271812 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.84 | 73.0 | 6.34e-01 | 93.8% | 65.8% |
| 4958963 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.84 | 76.0 | 6.51e-01 | 100.0% | 67.2% |
| 5050349 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.83 | 76.0 | 6.68e-01 | 98.8% | 71.3% |
| 4207916 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.83 | 77.0 | 6.28e-01 | 100.0% | 59.3% |
| 4951557 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.83 | 71.0 | 6.16e-01 | 93.8% | 61.7% |
| 4950594 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.83 | 75.0 | 5.09e-01 | 100.0% | 30.4% |
| 3744744 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.83 | 76.0 | 6.48e-01 | 100.0% | 68.0% |
| 3377325 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.83 | 77.0 | 6.18e-01 | 100.0% | 58.6% |
| 4959116 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.83 | 77.0 | 5.55e-01 | 100.0% | 40.5% |
| 5050352 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.83 | 71.0 | 6.10e-01 | 93.8% | 62.4% |
| 5008035 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.82 | 70.0 | 6.52e-01 | 92.5% | 75.0% |
| 4977585 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.82 | 75.0 | 6.23e-01 | 100.0% | 63.0% |
| 4980697 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.82 | 72.0 | 6.42e-01 | 95.0% | 70.9% |
| 5050355 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.82 | 75.0 | 6.15e-01 | 100.0% | 60.7% |
| 5045587 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.81 | 73.0 | 6.62e-01 | 100.0% | 74.3% |
| 5044941 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.81 | 71.0 | 6.45e-01 | 95.0% | 77.1% |
| 5033694 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.81 | 69.0 | 5.84e-01 | 91.3% | 58.4% |
| 5047355 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.81 | 73.0 | 6.46e-01 | 100.0% | 72.2% |
| 139075 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.79 | 68.0 | 6.19e-01 | 93.8% | 71.0% |
| 5046747 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.79 | 72.0 | 4.63e-01 | 100.0% | 24.9% |
| 5052683 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.79 | 73.0 | 6.28e-01 | 100.0% | 73.3% |
| 5051877 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.79 | 71.0 | 5.97e-01 | 98.8% | 63.1% |
| 3972415 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.78 | 68.0 | 5.98e-01 | 95.0% | 67.8% |
| 5069528 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.78 | 71.0 | 6.36e-01 | 100.0% | 73.6% |
| 5017897 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.77 | 63.0 | 5.11e-01 | 90.0% | 48.7% |
| 5007098 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.72 | 63.0 | 5.02e-01 | 100.0% | 50.3% |
| 5007123 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.68 | 60.0 | 5.16e-01 | 100.0% | 66.9% |
| 4950604 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.68 | 57.0 | 5.06e-01 | 92.5% | 73.9% |
| 4545039 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 39.0 | 4.13e-01 | 88.7% | 84.3% |
D2
medium
residues 1-52
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4egxD01 | 6.10.250.2520 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 53.0 | 4.84e-01 | 100.0% | 53.7% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 45.0 | 3.55e-01 | 90.4% | 28.2% |
| 4hh2C04 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.77 | 55.0 | 4.26e-01 | 80.8% | 34.2% |
| 1u6gC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.74 | 49.0 | 2.65e-01 | 80.8% | 3.1% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 59.0 | 4.77e-01 | 86.5% | 51.1% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 59.0 | 4.54e-01 | 86.5% | 44.0% |
| 2cfuA01 | 3.60.15.30 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Metallo-beta-lactamase domain | 0.72 | 44.0 | 2.61e-01 | 96.2% | 8.7% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 57.0 | 4.41e-01 | 86.5% | 45.3% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.69 | 52.0 | 3.36e-01 | 84.6% | 16.7% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.68 | 52.0 | 3.36e-01 | 86.5% | 17.7% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.68 | 53.0 | 3.42e-01 | 88.5% | 17.7% |
| 3k3dA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.67 | 50.0 | 3.82e-01 | 82.7% | 34.9% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.67 | 53.0 | 3.42e-01 | 86.5% | 18.8% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.62 | 48.0 | 3.27e-01 | 84.6% | 48.6% |
| 4wu3A02 | 3.30.70.1690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 43.0 | 3.69e-01 | 73.1% | 49.4% |
| 2jisA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.62 | 50.0 | 3.26e-01 | 90.4% | 80.3% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 47.0 | 2.94e-01 | 84.6% | 82.0% |
| 5k5iA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 37.0 | 3.73e-01 | 78.8% | 59.6% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.60 | 44.0 | 2.88e-01 | 88.5% | 16.5% |
| 4qxdA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 49.0 | 3.52e-01 | 92.3% | 73.4% |
| 7kw0A02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 42.0 | 2.97e-01 | 76.9% | 81.0% |
| 4zxwB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 43.0 | 2.92e-01 | 78.8% | 29.1% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 45.0 | 3.53e-01 | 92.3% | 53.2% |
| 2uvaG11 | 6.10.60.10 | Special › Helix non-globular › Hydrophobic Seed Protein › | 0.56 | 32.0 | 3.16e-01 | 78.8% | 50.9% |
| 2i7gB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.53 | 43.0 | 2.58e-01 | 88.5% | 92.8% |
| 4f78A01 | 3.30.200.180 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 37.0 | 3.04e-01 | 76.9% | 44.2% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.52 | 40.0 | 3.31e-01 | 86.5% | 92.1% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 38.0 | 2.47e-01 | 90.4% | 20.9% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 38.0 | 2.54e-01 | 82.7% | 25.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3248835 | 2004.5.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Njmu-R1 | 0.87 | 55.0 | 3.68e-01 | 96.2% | 18.9% |
| 3394225 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.87 | 58.0 | 4.35e-01 | 100.0% | 31.3% |
| 4044894 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.85 | 55.0 | 3.40e-01 | 100.0% | 13.7% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.84 | 56.0 | 4.11e-01 | 100.0% | 29.0% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.81 | 56.0 | 4.27e-01 | 76.9% | 33.0% |
| 4962383 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.80 | 70.0 | 4.91e-01 | 100.0% | 31.5% |
| 60305 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 59.0 | 4.58e-01 | 86.5% | 45.3% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 59.0 | 4.52e-01 | 86.5% | 44.5% |
| 4981980 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 59.0 | 4.45e-01 | 86.5% | 42.6% |
| 3675304 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 59.0 | 4.38e-01 | 86.5% | 40.0% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.72 | 58.0 | 4.55e-01 | 86.5% | 45.7% |
| 4381440 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.72 | 58.0 | 4.39e-01 | 86.5% | 41.7% |
| 3234976 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 57.0 | 4.43e-01 | 86.5% | 43.6% |
| 3594965 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 57.0 | 4.10e-01 | 86.5% | 34.3% |
| 3265214 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 57.0 | 4.34e-01 | 86.5% | 41.7% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.71 | 57.0 | 4.27e-01 | 86.5% | 40.0% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.71 | 57.0 | 4.69e-01 | 86.5% | 55.6% |
| 4017372 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 57.0 | 4.31e-01 | 86.5% | 41.7% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 57.0 | 4.48e-01 | 86.5% | 47.5% |
| 3579472 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 57.0 | 4.15e-01 | 86.5% | 36.9% |
| 3712081 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 57.0 | 4.35e-01 | 86.5% | 43.6% |
| 3276327 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.70 | 56.0 | 3.77e-01 | 90.4% | 23.0% |
| 3790375 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.70 | 57.0 | 4.17e-01 | 86.5% | 42.4% |
| 3321176 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.70 | 56.0 | 3.26e-01 | 86.5% | 24.8% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 56.0 | 4.24e-01 | 86.5% | 41.7% |
| 3213954 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.69 | 48.0 | 3.23e-01 | 73.1% | 30.0% |
| 3731599 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.68 | 49.0 | 3.13e-01 | 78.8% | 19.6% |
| 3987246 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.67 | 61.0 | 3.81e-01 | 100.0% | 54.5% |
| 4934465 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.67 | 50.0 | 3.23e-01 | 84.6% | 17.3% |
| 4441223 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.57 | 42.0 | 3.24e-01 | 86.5% | 62.7% |
| 3508781 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 43.0 | 3.53e-01 | 82.7% | 67.8% |
| 4179803 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 40.0 | 2.76e-01 | 86.5% | 34.0% |