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LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00328

Bact-Vir

LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00328

Identity

Kingdom:
phage

Quality

73.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-192
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.59e-01 86.8% 84.7%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.76e-01 82.1% 92.6%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.63 38.0 3.10e-01 87.7% 31.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.18e-01 91.5% 86.1%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 30.0 2.86e-01 100.0% 41.9%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.59 33.0 2.94e-01 89.6% 36.4%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 32.0 2.87e-01 86.8% 36.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 46.0 4.13e-01 95.3% 64.4%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.55e-01 100.0% 48.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.46e-01 100.0% 49.4%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.48e-01 100.0% 50.6%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.53 41.0 3.90e-01 84.0% 100.0%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.50 24.0 3.08e-01 78.3% 78.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 40.0 3.66e-01 94.3% 42.1%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 37.0 3.51e-01 86.8% 47.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.30e-01 87.7% 82.5%
3845351 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.61 36.0 3.92e-01 86.8% 68.9%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.19e-01 88.7% 83.3%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 36.0 3.92e-01 88.7% 81.2%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 33.0 3.73e-01 89.6% 85.0%
3651019 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.52 38.0 2.77e-01 75.5% 62.9%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.51 37.0 3.99e-01 92.5% 90.0%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.51 36.0 3.96e-01 88.7% 92.9%
4186556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 39.0 3.93e-01 99.1% 82.7%
337170 2.19.1.1 ↗ beta barrels › OB-fold › Putative membrane protein › Putative membrane protein › DUF3239 0.50 39.0 3.70e-01 84.0% 98.4%
D2 medium residues 3-76
PDB