←Back to structures
LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00351
Bact-VirLacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00351
Identity
- Kingdom:
- phage
Quality
55.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-64
D2
high
residues 84-142
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 42.0 | 3.44e-01 | 74.6% | 33.3% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.67 | 49.0 | 3.00e-01 | 78.0% | 47.2% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 48.0 | 4.88e-01 | 98.3% | 79.3% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 37.0 | 3.68e-01 | 71.2% | 53.3% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.64 | 36.0 | 3.18e-01 | 100.0% | 36.0% |
| 2jg0A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.62 | 50.0 | 2.95e-01 | 91.5% | 11.8% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.62 | 44.0 | 3.97e-01 | 78.0% | 71.8% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.61 | 41.0 | 4.22e-01 | 94.9% | 72.4% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.20e-01 | 79.7% | 74.3% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 40.0 | 2.83e-01 | 100.0% | 23.3% |
| 2egtA01 | 6.20.50.50 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 32.0 | 3.63e-01 | 100.0% | 100.0% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 40.0 | 2.96e-01 | 71.2% | 28.2% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.59 | 46.0 | 3.70e-01 | 96.6% | 53.1% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 48.0 | 4.72e-01 | 100.0% | 87.3% |
| 1cukA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 48.0 | 4.65e-01 | 100.0% | 84.8% |
| 3mxnB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 41.0 | 3.30e-01 | 81.4% | 56.5% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 37.0 | 2.85e-01 | 94.9% | 31.3% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 38.0 | 2.46e-01 | 78.0% | 83.2% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 38.0 | 3.09e-01 | 78.0% | 72.2% |
| 1l1oF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 45.0 | 3.55e-01 | 98.3% | 61.8% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 2.74e-01 | 96.6% | 18.9% |
| 1x43A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 32.0 | 3.20e-01 | 72.9% | 56.5% |
| 2rdgA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 44.0 | 4.20e-01 | 98.3% | 87.3% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 42.0 | 3.48e-01 | 93.2% | 99.1% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 38.0 | 3.00e-01 | 86.4% | 72.0% |
| 4w1vA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 42.0 | 3.18e-01 | 94.9% | 78.5% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 37.0 | 3.09e-01 | 78.0% | 44.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 36.0 | 3.01e-01 | 78.0% | 43.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 45.0 | 4.84e-01 | 74.6% | 68.0% |
| 4975474 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.70 | 40.0 | 3.88e-01 | 100.0% | 50.8% |
| 3604145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 44.0 | 4.41e-01 | 83.1% | 65.0% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.68 | 54.0 | 3.74e-01 | 86.4% | 36.8% |
| 5003276 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.66 | 38.0 | 3.75e-01 | 100.0% | 50.8% |
| 4197656 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.61 | 42.0 | 3.46e-01 | 74.6% | 97.5% |
| 4330612 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.61 | 51.0 | 5.00e-01 | 100.0% | 84.6% |
| 3322780 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.61 | 45.0 | 3.01e-01 | 83.1% | 35.3% |
| 4953054 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 40.0 | 3.74e-01 | 81.4% | 54.7% |
| 4038328 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.60 | 51.0 | 4.95e-01 | 100.0% | 84.6% |
| 3793758 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.60 | 38.0 | 4.05e-01 | 94.9% | 77.6% |
| 3800988 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.59 | 37.0 | 3.98e-01 | 94.9% | 77.6% |
| 4219215 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.59 | 49.0 | 4.60e-01 | 100.0% | 74.7% |
| 4315158 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.58 | 47.0 | 3.21e-01 | 93.2% | 24.9% |
| 3221508 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.58 | 36.0 | 4.00e-01 | 91.5% | 90.0% |
| 4390314 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.58 | 37.0 | 4.01e-01 | 93.2% | 84.4% |
| 3238074 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.58 | 41.0 | 2.88e-01 | 78.0% | 20.5% |
| 4928066 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 41.0 | 3.04e-01 | 78.0% | 74.7% |
| 3614289 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 40.0 | 2.41e-01 | 93.2% | 10.4% |
| 4046191 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.57 | 47.0 | 4.42e-01 | 100.0% | 73.3% |
| 4937431 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.57 | 41.0 | 3.02e-01 | 78.0% | 57.6% |
| 3163745 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 42.0 | 2.90e-01 | 81.4% | 58.7% |
| 4534526 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.57 | 47.0 | 4.58e-01 | 100.0% | 84.6% |
| 3996291 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.56 | 47.0 | 3.25e-01 | 96.6% | 25.9% |
| 3275633 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 46.0 | 2.97e-01 | 94.9% | 60.6% |
| 4069150 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.56 | 47.0 | 4.60e-01 | 100.0% | 84.6% |
| 3225920 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 44.0 | 2.88e-01 | 88.1% | 37.4% |
| 3987217 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 45.0 | 2.93e-01 | 93.2% | 20.7% |
| 4934385 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.56 | 40.0 | 2.90e-01 | 78.0% | 66.3% |
| 4128954 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.56 | 47.0 | 4.52e-01 | 100.0% | 88.6% |
| 4668516 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.55 | 46.0 | 4.50e-01 | 100.0% | 84.6% |
| 4337382 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.55 | 46.0 | 4.33e-01 | 100.0% | 74.7% |
| 4045978 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.55 | 46.0 | 4.55e-01 | 100.0% | 87.7% |
| 4886291 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.55 | 47.0 | 4.60e-01 | 100.0% | 89.2% |
| 3964608 | 220.1.1.104 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin | 0.54 | 38.0 | 3.61e-01 | 71.2% | 71.4% |
| 3656580 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.54 | 48.0 | 3.42e-01 | 100.0% | 45.1% |
| 3781291 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 39.0 | 3.24e-01 | 78.0% | 51.0% |
| 3743328 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.53 | 45.0 | 3.03e-01 | 100.0% | 82.5% |
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 38.0 | 2.80e-01 | 78.0% | 46.5% |
| 3906707 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 44.0 | 2.85e-01 | 98.3% | 49.0% |
| 5044987 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.33e-01 | 86.4% | 50.5% |
| 5022888 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.51 | 41.0 | 2.99e-01 | 93.2% | 50.3% |
| 4954645 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.50 | 37.0 | 3.04e-01 | 81.4% | 43.3% |