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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00002
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00002
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-188
Domain cluster:
rep: NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00052__D3-211
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.73 | 27.0 | 4.31e-01 | 96.8% | 88.1% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 25.0 | 3.78e-01 | 97.4% | 72.7% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 25.0 | 3.74e-01 | 97.4% | 87.1% |
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 25.0 | 3.10e-01 | 91.6% | 67.7% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 25.0 | 2.68e-01 | 90.3% | 48.1% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 20.0 | 2.34e-01 | 77.3% | 44.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3660755 | 4.8.1.21 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor | 0.61 | 25.0 | 3.51e-01 | 100.0% | 77.3% |
| 3493906 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.56 | 24.0 | 3.62e-01 | 75.3% | 98.3% |
| 4982498 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 30.0 | 1.99e-01 | 81.2% | 13.2% |
| 4424877 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.52 | 31.0 | 3.02e-01 | 70.1% | 50.3% |
| None | — | 0.52 | 23.0 | 3.23e-01 | 78.6% | 92.3% |