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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00039

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00039

Identity

Kingdom:
phage

Quality

78.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-93
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 45.0 3.74e-01 79.3% 39.6%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 46.0 4.26e-01 88.0% 58.0%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 40.0 3.43e-01 87.0% 38.7%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 48.0 4.62e-01 100.0% 70.9%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.63 37.0 4.10e-01 85.9% 74.6%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 45.0 4.17e-01 88.0% 61.4%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 37.0 3.66e-01 96.7% 55.4%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 43.0 3.29e-01 84.8% 30.7%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 49.0 4.54e-01 88.0% 76.3%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 45.0 4.28e-01 81.5% 95.4%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 46.0 4.16e-01 100.0% 61.6%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 48.0 4.49e-01 88.0% 76.5%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 44.0 4.21e-01 80.4% 88.9%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 47.0 4.46e-01 88.0% 74.5%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 4.10e-01 100.0% 60.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 36.0 3.94e-01 97.8% 80.3%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 50.0 4.52e-01 98.9% 82.3%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 35.0 3.39e-01 94.6% 54.8%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 34.0 3.76e-01 84.8% 74.3%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 3.00e-01 84.8% 29.5%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.79e-01 87.0% 41.9%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 49.0 4.52e-01 100.0% 76.7%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 48.0 4.20e-01 100.0% 72.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 47.0 4.17e-01 100.0% 65.4%
6wwdB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.55 41.0 3.36e-01 82.6% 67.4%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.23e-01 96.7% 39.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 43.0 4.17e-01 89.1% 90.4%
2wuqB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.39e-01 100.0% 89.0%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.33e-01 80.4% 96.3%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.54e-01 82.6% 92.2%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 37.0 2.64e-01 81.5% 23.2%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.93e-01 79.3% 83.5%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 3.21e-01 96.7% 42.7%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 45.0 4.47e-01 95.7% 99.0%
6bjqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.16e-01 87.0% 89.8%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 39.0 3.13e-01 80.4% 48.9%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 40.0 3.15e-01 85.9% 49.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 46.0 4.35e-01 100.0% 89.9%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 4.07e-01 96.7% 90.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 45.0 4.15e-01 81.5% 48.3%
4483150 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.71 59.0 4.91e-01 91.3% 67.5%
4990321 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.69 46.0 3.42e-01 84.8% 27.4%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 53.0 4.89e-01 85.9% 80.0%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.66 40.0 4.12e-01 82.6% 62.2%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.65 43.0 4.63e-01 82.6% 78.8%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 43.0 4.59e-01 98.9% 78.8%
3328840 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.64 40.0 4.20e-01 83.7% 68.2%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 44.0 4.79e-01 95.7% 86.7%
3492710 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.63 36.0 4.21e-01 85.9% 80.0%
3819740 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.63 39.0 3.99e-01 83.7% 63.3%
3805804 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 38.0 3.99e-01 82.6% 65.9%
3582164 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 51.0 3.56e-01 88.0% 87.0%
3318685 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.62 39.0 3.79e-01 83.7% 55.2%
4026007 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 38.0 4.00e-01 83.7% 68.8%
163341 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.62 45.0 4.18e-01 85.9% 61.6%
4522783 101.1.2.715 alpha arrays › HTH › HTH › winged helix domain › CheF-arch 0.62 44.0 3.16e-01 100.0% 24.6%
3619246 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 41.0 3.95e-01 87.0% 59.0%
3812869 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 39.0 3.82e-01 83.7% 58.0%
3265211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 4.18e-01 100.0% 58.4%
3514912 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 39.0 4.21e-01 85.9% 78.7%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 40.0 3.98e-01 85.9% 64.2%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 36.0 3.95e-01 81.5% 72.0%
4964699 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.60 44.0 4.30e-01 100.0% 71.0%
1141950 3449.1.1.1 a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.60 35.0 2.89e-01 88.0% 30.3%
4059525 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.60 48.0 4.81e-01 87.0% 96.8%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 40.0 2.75e-01 84.8% 19.7%
416354 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.59 49.0 4.43e-01 88.0% 66.9%
3633770 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 2.99e-01 85.9% 26.9%
3934534 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.53e-01 100.0% 90.0%
344114 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.59 46.0 4.17e-01 100.0% 62.1%
3889863 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 44.0 4.14e-01 82.6% 90.0%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 45.0 4.71e-01 96.7% 92.9%
5004718 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 45.0 3.86e-01 84.8% 58.1%
4949986 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.58 42.0 4.06e-01 100.0% 65.5%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 44.0 3.03e-01 81.5% 24.3%
5018913 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 39.0 3.60e-01 70.7% 98.3%
3596021 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.88e-01 83.7% 24.0%
5007104 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 41.0 3.99e-01 100.0% 68.6%
3234869 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.56 45.0 2.93e-01 85.9% 29.1%
3453961 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.07e-01 88.0% 38.0%
4353121 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 44.0 4.29e-01 85.9% 100.0%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 39.0 4.21e-01 89.1% 89.3%
3572707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 50.0 4.47e-01 97.8% 86.4%
3701911 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.55 44.0 3.39e-01 88.0% 41.8%
169967 4216.1.1.2 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.55 47.0 4.16e-01 100.0% 64.9%
3527704 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.55 48.0 4.56e-01 100.0% 91.8%
4956582 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.25e-01 98.9% 69.6%
3349450 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 48.0 4.40e-01 96.7% 78.3%
3365937 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 26.0 3.16e-01 77.2% 70.0%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.97e-01 93.5% 80.7%
3212636 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.58e-01 85.9% 15.6%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 39.0 3.83e-01 98.9% 70.5%
3571085 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.13e-01 98.9% 71.2%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 4.21e-01 98.9% 93.1%
3546312 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.52 46.0 4.34e-01 98.9% 84.5%
5052205 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 41.0 2.55e-01 88.0% 71.5%
337177 218.1.1.6 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › OSBS_N 0.52 39.0 4.09e-01 79.3% 91.6%
396 2.2.1.8 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.52 45.0 4.49e-01 95.7% 92.9%
5023892 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 41.0 3.70e-01 85.9% 89.1%
3290470 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 39.0 3.31e-01 81.5% 68.1%
3504767 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.52 38.0 4.23e-01 98.9% 100.0%
3979492 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.51 39.0 2.80e-01 81.5% 89.5%
5004264 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 40.0 3.70e-01 87.0% 91.1%
4951355 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 37.0 2.73e-01 78.3% 37.5%