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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00069
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00069
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-70
Domain cluster:
rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00454__D3-61
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7xkcA01 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.74 | 66.0 | 6.06e-01 | 100.0% | 76.5% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.74 | 65.0 | 6.48e-01 | 100.0% | 98.4% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.73 | 65.0 | 6.51e-01 | 100.0% | 96.8% |
| 2mgvA00 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.72 | 50.0 | 4.95e-01 | 100.0% | 69.2% |
| 3w0eA00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.71 | 62.0 | 6.03e-01 | 100.0% | 94.1% |
| 3py9A01 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.65 | 53.0 | 5.21e-01 | 87.1% | 95.5% |
| 3ahcA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.64 | 49.0 | 3.05e-01 | 85.5% | 36.0% |
| 5e0yA00 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.62 | 49.0 | 4.83e-01 | 87.1% | 95.6% |
| 2kudA01 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.61 | 48.0 | 4.68e-01 | 87.1% | 90.0% |
| 2dbsA00 | 3.40.1350.20 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 44.0 | 4.16e-01 | 82.3% | 82.5% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 51.0 | 3.83e-01 | 100.0% | 71.6% |
| 7xnzA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 51.0 | 4.07e-01 | 98.4% | 81.4% |
| 1xxmC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.58 | 50.0 | 4.76e-01 | 100.0% | 93.2% |
| 2imgA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 48.0 | 3.71e-01 | 95.2% | 69.8% |
| 1q9jB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 50.0 | 3.48e-01 | 98.4% | 39.4% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 49.0 | 3.87e-01 | 100.0% | 73.0% |
| 4g0bA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 48.0 | 3.41e-01 | 100.0% | 90.6% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.56 | 47.0 | 3.55e-01 | 100.0% | 61.4% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.55 | 40.0 | 3.15e-01 | 82.3% | 54.1% |
| 4jz5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 40.0 | 2.80e-01 | 75.8% | 96.1% |
| 6ldqA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 37.0 | 2.76e-01 | 71.0% | 85.0% |
| 7kw0A02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.55 | 47.0 | 3.54e-01 | 98.4% | 61.3% |
| 3h5iA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 3.37e-01 | 83.9% | 85.6% |
| 1yzyA01 | 3.40.50.10840 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Putative sugar-binding, N-terminal domain | 0.54 | 44.0 | 3.14e-01 | 98.4% | 59.8% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.54 | 40.0 | 3.69e-01 | 82.3% | 88.5% |
| 2pfiB01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 44.0 | 3.56e-01 | 100.0% | 65.9% |
| 3tm4A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.52 | 41.0 | 3.14e-01 | 98.4% | 96.3% |
| 4cgsA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.52 | 39.0 | 2.83e-01 | 79.0% | 40.5% |
| 2ww5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 41.0 | 2.98e-01 | 93.5% | 100.0% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 41.0 | 2.94e-01 | 98.4% | 69.2% |
| 6aefA01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 43.0 | 2.97e-01 | 100.0% | 69.4% |
| 2gb3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 38.0 | 2.91e-01 | 83.9% | 88.4% |
| 1xkfB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 42.0 | 3.49e-01 | 100.0% | 66.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023366 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.85 | 50.0 | 5.53e-01 | 96.8% | 74.0% |
| 5019345 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.78 | 53.0 | 5.32e-01 | 100.0% | 69.8% |
| 3972532 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.77 | 69.0 | 6.84e-01 | 100.0% | 98.4% |
| 3674451 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.77 | 69.0 | 6.87e-01 | 100.0% | 95.4% |
| 151608 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.77 | 69.0 | 6.58e-01 | 100.0% | 87.3% |
| 3742000 | 294.1.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors | 0.75 | 60.0 | 6.28e-01 | 100.0% | 100.0% |
| 3741562 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.75 | 64.0 | 6.43e-01 | 93.5% | 98.4% |
| 3196538 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.75 | 66.0 | 6.42e-01 | 100.0% | 95.7% |
| 4020903 | 294.1.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors | 0.74 | 65.0 | 6.47e-01 | 98.4% | 100.0% |
| 2874838 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.74 | 66.0 | 5.98e-01 | 100.0% | 73.8% |
| 4533266 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.74 | 66.0 | 6.36e-01 | 100.0% | 88.6% |
| 3457336 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.74 | 66.0 | 6.35e-01 | 100.0% | 100.0% |
| 4371646 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.73 | 52.0 | 5.13e-01 | 100.0% | 70.8% |
| 1831278 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.73 | 65.0 | 6.41e-01 | 100.0% | 92.5% |
| 1005023 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.71 | 61.0 | 6.01e-01 | 100.0% | 92.6% |
| 3960451 | 294.2.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C | 0.69 | 49.0 | 4.90e-01 | 100.0% | 72.3% |
| 4951610 | 294.2.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C | 0.66 | 51.0 | 5.42e-01 | 80.6% | 100.0% |
| 4397539 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 54.0 | 5.33e-01 | 87.1% | 96.9% |
| 4214934 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 55.0 | 5.24e-01 | 88.7% | 90.0% |
| 5019344 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 52.0 | 5.26e-01 | 85.5% | 98.4% |
| 1145747 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 53.0 | 5.20e-01 | 87.1% | 94.0% |
| 5018432 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 53.0 | 5.32e-01 | 87.1% | 100.0% |
| 3288243 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 53.0 | 5.39e-01 | 85.5% | 100.0% |
| 4147122 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.65 | 54.0 | 5.19e-01 | 88.7% | 95.7% |
| 4420926 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 51.0 | 5.10e-01 | 85.5% | 93.8% |
| 3288204 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 51.0 | 5.06e-01 | 85.5% | 95.4% |
| 4110313 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 53.0 | 5.09e-01 | 88.7% | 92.9% |
| 4938764 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 53.0 | 5.24e-01 | 88.7% | 98.5% |
| 4218629 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.63 | 52.0 | 5.34e-01 | 87.1% | 93.3% |
| 2800195 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.63 | 52.0 | 5.32e-01 | 87.1% | 93.3% |
| 4990949 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.62 | 43.0 | 2.86e-01 | 74.2% | 20.7% |
| 3586987 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.61 | 50.0 | 5.10e-01 | 87.1% | 93.3% |
| 5073669 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.60 | 53.0 | 4.06e-01 | 100.0% | 72.4% |
| 4953151 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.59 | 49.0 | 4.14e-01 | 100.0% | 96.5% |
| 4022826 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 50.0 | 3.75e-01 | 100.0% | 66.5% |
| 5040986 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 48.0 | 4.34e-01 | 100.0% | 72.2% |
| 3643204 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.57 | 42.0 | 3.25e-01 | 82.3% | 87.7% |
| 3993036 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.57 | 49.0 | 3.88e-01 | 100.0% | 74.8% |
| 3201828 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.57 | 49.0 | 3.80e-01 | 98.4% | 60.7% |
| None | — | 0.57 | 47.0 | 3.65e-01 | 96.8% | 68.7% | |
| 4384896 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 45.0 | 3.16e-01 | 93.5% | 72.6% |
| 4346910 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 44.0 | 3.04e-01 | 93.5% | 63.8% |
| 5002261 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 46.0 | 3.21e-01 | 95.2% | 70.0% |
| 3596273 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.55 | 46.0 | 3.23e-01 | 98.4% | 51.8% |
| 3788738 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.54 | 45.0 | 3.22e-01 | 100.0% | 68.9% |
| 5066674 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.54 | 45.0 | 3.82e-01 | 100.0% | 80.0% |
| 4228285 | 2004.1.1.474 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 | 0.54 | 39.0 | 3.00e-01 | 79.0% | 78.7% |
| 3991481 | 221.1.1.163 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GRHL1_C | 0.52 | 38.0 | 3.58e-01 | 100.0% | 62.5% |
| 3733903 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.51 | 40.0 | 2.79e-01 | 100.0% | 91.0% |
| 3401572 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.50 | 42.0 | 3.04e-01 | 95.2% | 68.1% |